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CSDAP MANUALS

Table of Contents

export PYTHONPATH of the source codes folder to .bashrc or .zshrc to auto-fill

e.g.: export PYTHONPATH="/Users/ychu/GitHub/MyCodes"

1. Read Snapshots
2. Particle Neighbors
3. Pair Correlation Functions
4. Structure Factors
5. Voronoi Tessellation
6. Dynamics test by log output
7. Dynamical Properties
8. Cage Relative Dynamics
9. Bond Orientational Order at 3D
10. Bond Orientational Order at 2D
11. Non-affine Strain
12. Pair Entropy
13. Demixing check
14. Local tetrahedral order
15. Spatial Correlation
16. Rewrite dump file
17. Read log file
18. Fitting data by python
19. Read angular vector file
20. Rotational motion
21. Ordering Time Correlation
22. Patchy alignment analysis
23. Coarse graining
24. Conditional property calculation
25. Gyration tensor
26. Get Fourier Transformation
27. Nematic Order
28. AutoCorrelations
29. Eigenvector field analysis
30. Custom Visuallization
31. Calculations from Freud
32. Packing Capability
33. Elastic Matrix