GitHub - yueqiw/ephys_analysis: Processing and analysis of patch clamp electrophysiology data

This repo contains code for processing and visualization of current clamp electrophysiology data in Python

Extract electrophysiology measurements from current clamp data (pClamp) using stfio and AllenSDK
Animated plots of membrane voltage in response to current injection (current_clamp.py)
Automatic analysis pipeline using Datajoint.io to combine analysis results with multiple levels of metadata (animals, cells, analysis parameters, etc) (schema_ephys.py)
Interactive data visualization using Dash and Plot.ly (iclamp_app.py)

Name		Name	Last commit message	Last commit date
Latest commit History 90 Commits
allensdk_0_14_2		allensdk_0_14_2
assets		assets
visualization		visualization
.gitignore		.gitignore
Dockerfile		Dockerfile
Dockerfile.schema		Dockerfile.schema
LICENSE		LICENSE
README.md		README.md
__init__.py		__init__.py
config.txt		config.txt
current_clamp.py		current_clamp.py
current_clamp_features.py		current_clamp_features.py
docker-compose.yml		docker-compose.yml
file_io.py		file_io.py
read_metadata.py		read_metadata.py
requirements-schema.txt		requirements-schema.txt
requirements.txt		requirements.txt
run.sh		run.sh
run_viz.py		run_viz.py
schema_ephys.py		schema_ephys.py

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