chore: update pre-commit hooks (#1642)

* chore: update pre-commit hooks

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.1.14 → v0.2.1](astral-sh/ruff-pre-commit@v0.1.14...v0.2.1)
- [github.com/psf/black: 23.12.1 → 24.2.0](psf/black@23.12.1...24.2.0)

* run black incl. comments for '...'

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Josh Moore <josh@openmicroscopy.org>

.pre-commit-config.yaml

@@ -8,11 +8,11 @@ default_language_version:
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
     # Ruff version.
-    rev: 'v0.1.14'
+    rev: 'v0.2.1'
     hooks:
     - id: ruff
   - repo: https://github.com/psf/black
-    rev: 23.12.1
+    rev: 24.2.0
     hooks:
     - id: black
   - repo: https://github.com/codespell-project/codespell

zarr/convenience.py

@@ -1,4 +1,5 @@
 """Convenience functions for storing and loading data."""
+
 import itertools
 import os
 import re

zarr/core.py

@@ -2060,9 +2060,11 @@ def _process_chunk(
                 index_selection = PartialChunkIterator(chunk_selection, self.chunks)
                 for start, nitems, partial_out_selection in index_selection:
                     expected_shape = [
-                        len(range(*partial_out_selection[i].indices(self.chunks[0] + 1)))
-                        if i < len(partial_out_selection)
-                        else dim
+                        (
+                            len(range(*partial_out_selection[i].indices(self.chunks[0] + 1)))
+                            if i < len(partial_out_selection)
+                            else dim
+                        )
                         for i, dim in enumerate(self.chunks)
                     ]
                     if isinstance(cdata, UncompressedPartialReadBufferV3):

zarr/indexing.py

@@ -545,11 +545,11 @@ def ix_(selection, shape):
 
     # replace slice and int as these are not supported by numpy.ix_
     selection = [
-        slice_to_range(dim_sel, dim_len)
-        if isinstance(dim_sel, slice)
-        else [dim_sel]
-        if is_integer(dim_sel)
-        else dim_sel
+        (
+            slice_to_range(dim_sel, dim_len)
+            if isinstance(dim_sel, slice)
+            else [dim_sel] if is_integer(dim_sel) else dim_sel
+        )
         for dim_sel, dim_len in zip(selection, shape)
     ]
 

zarr/n5.py

@@ -1,5 +1,6 @@
 """This module contains a storage class and codec to support the N5 format.
 """
+
 import os
 import struct
 import sys

zarr/storage.py

@@ -14,6 +14,7 @@
 path) and a `getsize` method (return the size in bytes of a given value).
 
 """
+
 import atexit
 import errno
 import glob

zarr/sync.py

@@ -8,6 +8,7 @@ class Synchronizer(Protocol):
     """Base class for synchronizers."""
 
     def __getitem__(self, item):
+        # see subclasses
         ...
 
 

zarr/types.py

@@ -10,4 +10,5 @@
 
 class MetaArray(Protocol):
     def __array_function__(self, func, types, args, kwargs):
+        # To be extended
         ...