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  1. Plant_DNA_LLMs Plant_DNA_LLMs Public

    PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes

    Python 58 9

  2. Chorus2 Chorus2 Public

    A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).

    Python 26 7

  3. DNALLM DNALLM Public

    DNALLM-Suite: A unified Suite of Utilities for accelerating applications of DNA Large Language Model in Genomics

    Jupyter Notebook 9 5

  4. CRISPRMatch CRISPRMatch Public archive

    Python 6 1

  5. CAPE CAPE Public

    Python 4 1

  6. dnallmmark dnallmmark Public

    JavaScript 2

Repositories

Showing 10 of 20 repositories
  • DNALLM Public

    DNALLM-Suite: A unified Suite of Utilities for accelerating applications of DNA Large Language Model in Genomics

    zhangtaolab/DNALLM's past year of commit activity
    Jupyter Notebook 9 MIT 5 0 3 Updated Oct 5, 2026
  • dnallmmark Public
    zhangtaolab/dnallmmark's past year of commit activity
    JavaScript 2 0 0 0 Updated Sep 29, 2026
  • SIF Public
    zhangtaolab/SIF's past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 25, 2026
  • FungiHelixSeek Public

    A Hybrid Linear Attention-Transformer Mixture-of-Experts (MoE) DNA foundation model for Fungi

    zhangtaolab/FungiHelixSeek's past year of commit activity
    Python 1 MIT 0 0 0 Updated Sep 17, 2026
  • zhangtaolab.github.io Public
    zhangtaolab/zhangtaolab.github.io's past year of commit activity
    SCSS 1 4 0 0 Updated Sep 17, 2026
  • Chorus2 Public

    A pipeline to select oligonucleotides for fluorescence in situ hybridization (Oligo-FISH).

    zhangtaolab/Chorus2's past year of commit activity
    Python 26 MIT 7 3 0 Updated Sep 5, 2026
  • Plant_DNA_LLMs Public

    PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes

    zhangtaolab/Plant_DNA_LLMs's past year of commit activity
    Python 58 9 3 0 Updated Sep 5, 2026
  • PlantHelixSeek Public

    A Hybrid Linear Attention-Transformer Mixture-of-Experts (MoE) DNA Language Model for Plants

    zhangtaolab/PlantHelixSeek's past year of commit activity
    Python 2 MIT 0 0 0 Updated Aug 14, 2026
  • rustkmer Public
    zhangtaolab/rustkmer's past year of commit activity
    Rust 1 MIT 0 1 1 Updated Jul 3, 2026
  • MambaForSequenceClassification Public Forked from Adibvafa/MambaForSequenceClassification

    Add MambaForSequenceClassification to HuggingFace.

    zhangtaolab/MambaForSequenceClassification's past year of commit activity
    Python 0 Apache-2.0 35,554 0 0 Updated Oct 23, 2024
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