ok what about this?

zktuong · Apr 21, 2023 · 7876cfe · 7876cfe
1 parent 4a973f3
commit 7876cfe
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diff --git a/.github/workflows/singularity_container-install.yml b/.github/workflows/singularity_container-install.yml
@@ -1,32 +1,35 @@
 name: Test Singularity Build
-on: 
+on:
   # push:
   #   branches:
   #     - master
   # Do the builds on all pull requests (to test them)
-  pull_request: 
+  pull_request:
     branches:
       - "*"
 
 jobs:
   changes:
     name: Checking changed files
     runs-on: ubuntu-latest
-    outputs:
-      changed_file: ${{ steps.files.outputs.added_modified }}
-      keepgoing: ${{ steps.checkfiles.outputs.keepgoing }}
     steps:
-      - id: files
-        uses: jitterbit/get-changed-files@v1
+      - uses: actions/checkout@v3
         with:
-          format: 'json'
-      - id: checkfiles
+          fetch-depth: 0
+      - name: Get changed files
+        id: changed-files
+        uses: tj-actions/changed-files@v35
+        with:
+          files: |
+            *.yml*
+            *.py*
+            *test*
+            *requirements*
+            *database*
+      - name: Get if changed files need to continue
+        if: steps.changed-files.outputs.any_changed == 'true'
         run: |
-          if [[ ${{ steps.files.outputs.added_modified }} == *.yml* || ${{ steps.files.outputs.added_modified }} == *.py* || ${{ steps.files.outputs.added_modified }} == *test* || ${{ steps.files.outputs.added_modified }} == *requirements* || ${{ steps.files.outputs.added_modified }} == *database* ]] ; then
-            echo "keepgoing=true" >> $GITHUB_OUTPUT
-          else
-            echo "keepgoing=false" >> $GITHUB_OUTPUT
-          fi
+          echo "keepgoing=true" >> $GITHUB_OUTPUT
 
   container:
     needs:
@@ -64,7 +67,7 @@ jobs:
           cd singularity-ce-${SINGULARITY_VERSION} && \
           ./mconfig -p /usr/local && \
           make -C builddir && \
-          sudo make -C builddir install          
+          sudo make -C builddir install
       - name: Check out code for the container build
         uses: actions/checkout@v2
 
@@ -88,4 +91,4 @@ jobs:
         run: |
           cd container
           sudo singularity test --writable-tmpfs sc-dandelion.sif
-          singularity run -B $PWD sc-dandelion.sif dandelion-preprocess --help
+          singularity run -B $PWD sc-dandelion.sif dandelion-preprocess --help