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Speed up network generation #319

Merged
merged 13 commits into from Oct 5, 2023
Merged

Speed up network generation #319

merged 13 commits into from Oct 5, 2023

Commits on Oct 4, 2023

  1. sped up tl.generate_network 

    turns out .groupby is a lot faster than trying to loop it like how it's currently working.
    @zktuong
    zktuong committed Oct 4, 2023
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  2. shh

    @zktuong
    zktuong committed Oct 4, 2023
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  3. Update _network.py

    @zktuong
    zktuong committed Oct 4, 2023
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  4. ok this is the correct place to adjust

    @zktuong
    zktuong committed Oct 4, 2023
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  5. Revert "Update _network.py" 

    This reverts commit 2a6ad82.
    @zktuong
    zktuong committed Oct 4, 2023
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  6. does this speed up?

    @zktuong
    zktuong committed Oct 4, 2023
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  7. add option to only generate expanded network

    @zktuong
    zktuong committed Oct 4, 2023
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  8. Update api.rst

    @zktuong
    zktuong committed Oct 4, 2023
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  9. Update _network.py

    @zktuong
    zktuong committed Oct 4, 2023
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  10. unnecessary copy

    @zktuong
    zktuong committed Oct 4, 2023
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  11. Update test_mouse.py 

    fix regression
    @zktuong
    zktuong committed Oct 4, 2023
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  12. Update _network.py

    @zktuong
    zktuong committed Oct 4, 2023
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  13. fix error

    @zktuong
    zktuong committed Oct 4, 2023
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