This simple project is an example repo for Python projects I learned from Kenneth Reitz
If you want to learn more about setup.py files, check out this repository <https://github.com/kennethreitz/setup.py>
RNAseqEnsemble is an analytical framework collecting a few popular RNAseq analysis methods like DESeq, baySeq cuffdiff TSPM edgeR.
RNAseqEnsemble was developed using Python 2.7.13. In addition to requirements specified in setup.py, RNAseqEnsemble requires installation of the following tools:
Proper function of RNAseqEnsemble requires the paths to depencies to be set. To do this, manually set the paths in paths.cfg using a text editor.
After the correct paths have been set, install RNAseqEnsemble with the following command:
python setup.py install
All of RNAseqEnsembles functions may be accessed using its command line interface. General usage is as follows:
RNAseqEnsemble COMMAND [OPTIONS] [ARGS]...
A list of commands can be found by using the following:
RNAseqEnsemble --help
Details about each command can be found by using the following:
RNAseqEnsemble COMMAND --help
See the manual for further usage details.
RNAseqEnsemble was developed initially by Jianying Li.
This project is licensed under the MIT License. See LICENSE for details.
This package was created with Cookiecutter, the audreyr/cookiecutter-pypackage, my previous colleague Christopher Lavender and Kenneth Reitz's project template.