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Hi,
Is it possible to select bam records used for d4 file calculations based on bam flag value (as it is done in mosdepth with --flag 1796) ?
--flag 1796
And if not possible at this time, are duplicates included or excluded from d4 create command ?
d4 create
Thanks Anthony
The text was updated successfully, but these errors were encountered:
@38 this would be a very helpful feature to add. Can you tackle it when you have a chance?
Sorry, something went wrong.
@38 I was also thinking that incorporating a threshold on MapQ could be very useful as well. Many thanks
Sorry just realized this mapq option actually exists :-)
@38 can you close this issue?
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Hi,
Is it possible to select bam records used for d4 file calculations based on bam flag value (as it is done in mosdepth with
--flag 1796
) ?And if not possible at this time, are duplicates included or excluded from
d4 create
command ?Thanks
Anthony
The text was updated successfully, but these errors were encountered: