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Would like to report another issue, thanks
$ hic2cool GSE63525_IMR90_combined_30.hic GSE63525_IMR90_combined_30.cool ################ ### hic2cool ### ################ hic file header info: Chromosomes: [u'All', u'chr1', u'chr2', u'chr3', u'chr4', u'chr5', u'chr6', u'chr7', u'chr8', u'chr9', u'chr10', u'chr11', u'chr12', u'chr13', u'chr14', u'chr15', u'chr16', u'chr17', u'chr18', u'chr19', u'chr20', u'chr21', u'chr22', u'chrX', u'chrY', u'chrM'] Resolutions: [2500000, 1000000, 500000, 250000, 100000, 50000, 25000, 10000, 5000] Genome: hg19 Traceback (most recent call last): File "/opt/apps/python2/bin/hic2cool", line 11, in sys.exit(main()) File "/opt/apps/python2/lib/python2.7/site-packages/hic2cool/__main__.py", line 46, in main args.normalization, args.exclude_MT, True) File "/opt/apps/python2/lib/python2.7/site-packages/hic2cool/hic2cool_utils.py", line 769, in hic2cool_convert chr_footer_info, bin_map, count_map) File "/opt/apps/python2/lib/python2.7/site-packages/hic2cool/hic2cool_utils.py", line 404, in parse_hic c2Norm = read_normalization_vector(req, chr_footer_info[c2]) KeyError: 9
The text was updated successfully, but these errors were encountered:
Please see #14
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Would like to report another issue, thanks
$ hic2cool GSE63525_IMR90_combined_30.hic GSE63525_IMR90_combined_30.cool ################ ### hic2cool ### ################ hic file header info: Chromosomes: [u'All', u'chr1', u'chr2', u'chr3', u'chr4', u'chr5', u'chr6', u'chr7', u'chr8', u'chr9', u'chr10', u'chr11', u'chr12', u'chr13', u'chr14', u'chr15', u'chr16', u'chr17', u'chr18', u'chr19', u'chr20', u'chr21', u'chr22', u'chrX', u'chrY', u'chrM'] Resolutions: [2500000, 1000000, 500000, 250000, 100000, 50000, 25000, 10000, 5000] Genome: hg19 Traceback (most recent call last): File "/opt/apps/python2/bin/hic2cool", line 11, in sys.exit(main()) File "/opt/apps/python2/lib/python2.7/site-packages/hic2cool/__main__.py", line 46, in main args.normalization, args.exclude_MT, True) File "/opt/apps/python2/lib/python2.7/site-packages/hic2cool/hic2cool_utils.py", line 769, in hic2cool_convert chr_footer_info, bin_map, count_map) File "/opt/apps/python2/lib/python2.7/site-packages/hic2cool/hic2cool_utils.py", line 404, in parse_hic c2Norm = read_normalization_vector(req, chr_footer_info[c2]) KeyError: 9The text was updated successfully, but these errors were encountered: