Release 0.24.0 #2406
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Release 0.24.0 #2406
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* Ensure initial state parameters are always fixed parameters * Ensure initial concentration for preequilibration and simulation are both set in both phases to avoid NaN issues * Fix initialAssignment handling during PEtab import (missed in #2359)
Fixes cmake-install failures during model import in cases where BLAS was not found via FindBLAS. Needs a prettier solution at some point, but it does the job for now.
A few recently added members were missing. Constraints were not copied when cloning a Solver.
* Update valgrind suppressions
This reverts commit 6bbcde2. Fixed in sphinx 7.3.6 (https://www.sphinx-doc.org/en/master/changes.html)
#2401) …annotations Should cover everything currently present in `amici.py`, except for overloaded methods. Exclude two methods from swig interface that aren't easily usable from Python.
`import exhale_multiproject_monkeypatch` fails on some systems due to unclear sys.path issues. Therefore, we need to adjust sys.path manually.
So far, only the explicitly listed attributes are accessible directly via SwigPtrView. Things like ReturnData.ny are only available through ReturnDataView.ptr.ny, which is inconvenient. Let's just look all non-private attributes that are not already explicitly handled by SwigPtrView on _swigptr and return them as is.
So far, CMakeLists.txt only provided a path hint for sundials for the standalone c++ library, but not for the python package. The latter should be added to ensure the right sundials version is found. There have been issues with system installations of sundials. Closes #2394
Codecov ReportAttention: Patch coverage is
Additional details and impacted files@@ Coverage Diff @@
## master #2406 +/- ##
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+ Coverage 77.73% 77.82% +0.09%
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Files 324 324
Lines 20864 20895 +31
Branches 1458 1458
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+ Hits 16219 16262 +43
+ Misses 4642 4630 -12
Partials 3 3
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FFroehlich
approved these changes
Apr 22, 2024
* KissVen2024 * ..
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This will be the last release supporting Python 3.9 (#2391)