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NEWS
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Changes in version 1.4.4
o FIX: minor fix to get back on CRAN
o TODO: major refactor for the entire package to increase future reliability
Changes in version 1.4.3
o FIX: switching to different network estimations in Shiny app
Changes in version 1.4.2
o FIX: bug in reset of Shiny application
o FIX: name ordering of `bootSemNeT` plots
o ADD: t-tests to `test.bootSemNeT` and Shiny app
o FIX: p-value bug in random networks tests
Changes in version 1.4.1
o FIX: unequal nodes and edges in `test.bootSemNeT` (GitHub Issue #3)
o UPDATE: tooltips added to network estimation methods in Shiny
o UPDATE: associated Shiny packages messages suppressed on Shiny startup
o UPDATE: message for Shiny results output
o UPDATE: `test.bootSemNeT` no longer uses number of nodes in ANCOVA
o UPDATE: added minimum number (`type = "num"`) and proportion (`type = "prop"`) of co-occurrences argument to `NRW`
o UPDATE: Shiny with new `NRW` arguments
o UPDATE: Shiny now provides effect sizes for partial eta squared in Bootstrap Network Analyses tab
o FIX: `PF` remove zeros bug (when there were no zero distances, then an empty matrix was given)
Changes in version 1.4.0
o UPDATE: output names for `randwalk`
o UPDATE: Shiny interface is condensed and more step-by-step progressive
o UPDATE: Shiny includes random walk analysis
o UPDATE: Shiny includes spreading activation analysis (thanks to Cythina Siew)
o ADD: animation plot for spreading activation analysis in Shiny
o FIX: `randwalk` bug with 'steps' and 'reps' argument
o FIX: Shiny 'Clear Results' for new analyses
o UPDATE: progress bar for some Shiny analyses
o FIX: output for animation plots in Shiny
o UPDATE: S3method for animation plots
o UPDATE: citations added to Shiny analyses
o ADD: permutation test to SemNeT (`permSemNeT) and Shiny
o UPDATE: ANOVAs controlling for the number of nodes and edges is now the statistical test in `test.bootSemNeT`
o ADD: functions to convert data into other softwares format: SNAFU (`convert2snafu`) and igraph (`convert2igraph`)
Changes in version 1.3.0
o FIX: output of two-way ANOVA in `test.bootSemNeT`
o FIX: 'groups' argument in `test.bootSemNeT`
o UPDATE: added integration of SemNetCleaner output into `SemNeTShiny`
o MOVE: `equate` and `finalize` moved from SemNetCleaner to SemNeT
o REMOVE: foreach and doParallel dependencies were removed (all parallelization is through the pbapply package)
o REMOVE: SemNetCleaner dependency was removed to allow SemNeT to operate independently -- all necessary functions from SemNetCleaner have been moved to internal functions
o UPDATE: `compare.nets` has changed to `compare_nets`
o ADD: Several semantic network estimation methods (see `CN`, `NRW`, and `PF`) -- these are included in the Shiny app
o CHANGE: `partboot` is now `bootSemNeT`
o CHANGE: `plot.partboot` is now `plot.bootSemNeT`
o CHANGE: `partboot.test` is now `test.bootSemNeT`
o UPDATE: `cosine` was added to internal functions to remove archived package from dependencies
Changes in version 1.2.0
o ADD: Shiny app
o FIX: 'groups' argument in `org.plot`
o UPDATE: moved several functions to internal to clean up package
o ADD: binary responses matrices from animals verbal fluency data associated with the 'SemNetCleaner' package (open.animals)
Changes in version 1.1.3
o added extended ANOVA capabilities to `partboot.test` (e.g., two-way ANOVA)
Changes in version 1.1.2
o fixed bug for weighted modularity in `semnetmeas`
o updated citation (PsyArXiv)
o changed y-axis in plots for `partboot` to read as integers (as added black dot for mean in the scatterplots under the raincloud)
o added vignette for analyzing semantic networks
o added data for plots in vignette
Changes in version 1.1.1
o updated citation
Changes in version 1.1.0
o changed `semnetmeas` to allow calculation of any combination of measures
o `partboot`, `partboot.test`, `plot.partboot`, `randnet.test`, and `compare.nets` now handle groups greater than 2
o bug fixes
Changes in version 1.0.0
o serious, and I mean serious, revamp of functions (all for the better)
o moved most functions over to 'SemNetCleaner' and now only consists of methods and measures for semantic network analysis
o added a `sim.fluency` function for toy examples in CRAN checks
o added two datasets 'one.result' and 'two.result' for toy examples in CRAN checks
o `partboot.plot` changed to `plot.partboot` and added to S3 methods
o `partboot.test` now outputs a list for each network measure
Changes in version 0.9.9
o animals.database: a database for animals was added
o animals.misnomer: common misnomers for animals was added
o textcleaner: added database functionality, which makes the cleaning process more accurate, efficient, and reproducible
o several wrapper functions added to aid textcleaning from a database
Changes in version 0.1.2
o autoConverge: significantly improved interface
o separated all function files into individual files
o semnetcleaner (changed to textcleaner): added argument to input participants by row or column; ids now included for output; added output to show what spellcheck changed
o destr: improved functionality to allow selection of separating character
o randwalk: added a function to simulate random walks on the network to examine spontaenous spreading activation
o bin2resp: a function to change cleaned binary response data back into character data for each participant
Changes in version 0.1.1
o cosine: added cosine similarity
o semnetboot: changed name to partboot and added the cosine similarity
o semnetmeas: moved from NetworkToolbox
o plot.partboot: a function that generates "raindrop" plots for bootstrapped data
o org.plot: an organization function for plot.partboot (not for individual use)
o convert2cytoscape: added a function to convert a network matrix into a sparse matrix for Cytoscape visualization
o added new examples with corresponding data files
Changes in version 0.1.0
o autoConverge: created an automated converge function to eliminate the manual converge process
o autoDeStr: created an automated de-string function to eliminate most manual de-stringing
o fine-tuned most functions
o semnetboot: moved from package NetworkToolbox