b1059 Structure

The overall directory structure of /projects/b1059/ is as follows:

• data - fastqs, bams, and other data.
• software - Centrally used software can be stored here.
• projects - Individual projects that have a definitive endpoint.
• workflows - Workflows used in ongoing projects. For example, Wild Isolate, RIL, and NIL sequencing.
• analysis - Output from workflows run on ongoing projects.

The Andersen lab has a number of 'ongoing' sequencing projects. For example, we are continually sequencing wild-isolates, RILs, and NILs. For these projects, we use the workflows folder, and the output from those goes to the analysis folder.

More information on the structure of these folders is below.

data

software

Software should be organized by name into indvidual folders.

workflows

analysis

Workflows generate the following outputs:

1. wi-nf --> /WI-20XX-XX-XX - When the wild isolate pipeline is run, results are organized into a folder with the days date.
2. wi-concordance --> /WI-concordance -

b1059 Structure