chore: #1294: Updated SQL queries.

MiscTestingAndDebuggingResources/ManualTesting/MatchPredictionValidation/exercise4/SQL_Homework_1_HomeworkCheck.sql

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+/*
+ * CHECK THAT HOMEWORK SETS HAVE BEEN IMPORTED
+ * Can also use this query to follow progress of the individual PDP processing.
+ */
+
+SELECT *
+FROM HomeworkSets h
+JOIN PatientDonorPairs pdp
+ON h.Id = pdp.HomeworkSet_Id
+ORDER BY HomeworkSet_Id, PatientId, DonorId

MiscTestingAndDebuggingResources/ManualTesting/MatchPredictionValidation/exercise4/SQL_Homework_3_ImputationResults.sql

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+/*
+ *	SELECT INFO BY PATIENT AND DONOR ID
+ */
+
+-- SET THE FOLLOWING VARS
+DECLARE @PatientId varchar(16) = 'P000820'
+DECLARE @DonorId varchar(16) = 'D908661'
+DECLARE @MatchCountDenominator int = 10 -- i.e., "10" for x/10 search, "8" for x/8 search, etc.
+
+
+/*
+ * QUERIES
+ */
+
+DECLARE @PatientImputationId int = (SELECT Id FROM ImputationSummaries WHERE ExternalSubjectId = @PatientId)
+DECLARE @DonorImputationId int = (SELECT Id FROM ImputationSummaries WHERE ExternalSubjectId = @DonorId)
+
+-- select imputation summaries for patient and donor
+SELECT si.*, i.*
+FROM ImputationSummaries i
+JOIN SubjectInfo si
+ON i.ExternalSubjectId = si.ExternalId
+WHERE i.Id = @PatientImputationId
+
+SELECT si.*, i.*
+FROM ImputationSummaries i
+JOIN SubjectInfo si
+ON i.ExternalSubjectId = si.ExternalId
+WHERE i.Id = @DonorImputationId
+
+-- select distinct genotypes for patient
+SELECT DISTINCT
+	Patient_A_1, Patient_A_2,
+	Patient_B_1, Patient_B_2,
+	Patient_C_1, Patient_C_2,
+	Patient_DQB1_1, Patient_DQB1_2,
+	Patient_DRB1_1, Patient_DRB1_2,
+	Patient_Likelihood
+FROM MatchingGenotypes mg
+JOIN ImputationSummaries i
+ON mg.Patient_ImputationSummary_Id = i.Id
+WHERE i.Id = @PatientImputationId
+
+-- select distinct genotypes for donors
+SELECT DISTINCT
+	Donor_A_1, Donor_A_2,
+	Donor_B_1, Donor_B_2,
+	Donor_C_1, Donor_C_2,
+	Donor_DQB1_1, Donor_DQB1_2,
+	Donor_DRB1_1, Donor_DRB1_2,
+	Donor_Likelihood
+FROM MatchingGenotypes mg
+JOIN ImputationSummaries i
+ON mg.Donor_ImputationSummary_Id = i.Id
+WHERE i.Id = @DonorImputationId
+
+-- select matching genotypes
+SELECT mg.*
+FROM MatchingGenotypes mg
+JOIN ImputationSummaries p
+ON mg.Patient_ImputationSummary_Id = p.Id
+JOIN ImputationSummaries d
+ON mg.Donor_ImputationSummary_Id = d.Id
+WHERE p.Id = @PatientImputationId and d.Id = @DonorImputationId
+
+-- select match probabilities
+DECLARE @PatientLikelihoodSum decimal = (SELECT SumOfLikelihoods FROM ImputationSummaries WHERE Id = @PatientImputationId)
+DECLARE @DonorLikelihoodSum decimal = (SELECT SumOfLikelihoods FROM ImputationSummaries WHERE Id = @DonorImputationId)
+DECLARE @MatchProbabilityDenominator decimal = (@PatientLikelihoodSum * @DonorLikelihoodSum)
+
+SELECT
+	@MatchCountDenominator - TotalCount AS MismatchCount_Total,
+	100 * SUM(Patient_Likelihood * Donor_Likelihood) / @MatchProbabilityDenominator AS ProbabilityPercentage
+FROM MatchingGenotypes
+WHERE Patient_ImputationSummary_Id = @PatientImputationId and Donor_ImputationSummary_Id = @DonorImputationId
+GROUP BY TotalCount
+
+SELECT
+	2 - A_Count AS MismatchCount_A,
+	100 * SUM(Patient_Likelihood * Donor_Likelihood) / @MatchProbabilityDenominator AS ProbabilityPercentage
+FROM MatchingGenotypes
+WHERE Patient_ImputationSummary_Id = @PatientImputationId and Donor_ImputationSummary_Id = @DonorImputationId
+GROUP BY A_Count
+
+SELECT
+	2 - B_Count AS MismatchCount_B,
+	100 * SUM(Patient_Likelihood * Donor_Likelihood) / @MatchProbabilityDenominator AS ProbabilityPercentage
+FROM MatchingGenotypes
+WHERE Patient_ImputationSummary_Id = @PatientImputationId and Donor_ImputationSummary_Id = @DonorImputationId
+GROUP BY B_Count
+
+SELECT
+	2 - C_Count AS MismatchCount_C,
+	100 * SUM(Patient_Likelihood * Donor_Likelihood) / @MatchProbabilityDenominator AS ProbabilityPercentage
+FROM MatchingGenotypes
+WHERE Patient_ImputationSummary_Id = @PatientImputationId and Donor_ImputationSummary_Id = @DonorImputationId
+GROUP BY C_Count
+
+SELECT
+	2 - DQB1_Count AS MismatchCount_DQB1,
+	100 * SUM(Patient_Likelihood * Donor_Likelihood) / @MatchProbabilityDenominator AS ProbabilityPercentage
+FROM MatchingGenotypes
+WHERE Patient_ImputationSummary_Id = @PatientImputationId and Donor_ImputationSummary_Id = @DonorImputationId
+GROUP BY DQB1_Count
+
+SELECT
+	2 - DRB1_Count AS MismatchCount_DRB1,
+	100 * SUM(Patient_Likelihood * Donor_Likelihood) / @MatchProbabilityDenominator AS ProbabilityPercentage
+FROM MatchingGenotypes
+WHERE Patient_ImputationSummary_Id = @PatientImputationId and Donor_ImputationSummary_Id = @DonorImputationId
+GROUP BY DRB1_Count