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feature: #1294: Added ability to process MV4 homework
--- docs: #1294: Added homework instructions and updated debug client models changelog. chore: #1294: Updated SQL queries. refactor: #1294: Yield Genotype matcher response as enumerable prevent memory exceptions. refactor: #1294: Use IEnumerable when bulk inserting to reduce memory usage. chore: #1294: Add SQL to select out chore: #1294: Store matching genotypes refactor: #1294: Move match prediction debug models to debug client models namespace. chore: #1294: Add HLA version to homework set. chore: #1294: SQL for selecting out homework subjects with missing HLA. chore: #1294: Process all sets imported found in a directory. chore: #1294: Import pdps directly from file. chore: #1294: Detect subjects with missing HLA. chore: #1294: Add functions to submit MV4 homework request. chore: #1294: Add genotype count to debug model, genotype matcher response.
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4 changes: 1 addition & 3 deletions
4
...otypeFrequencySet/FrequencySetMetadata.cs → ...s/MatchPrediction/FrequencySetMetadata.cs
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6 changes: 3 additions & 3 deletions
6
...Models/Debug/GenotypeImputationRequest.cs → ...chPrediction/GenotypeImputationRequest.cs
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6 changes: 3 additions & 3 deletions
6
...odels/Debug/GenotypeImputationResponse.cs → ...hPrediction/GenotypeImputationResponse.cs
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6 changes: 3 additions & 3 deletions
6
...ns/Models/Debug/GenotypeMatcherRequest.cs → ...MatchPrediction/GenotypeMatcherRequest.cs
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4 changes: 2 additions & 2 deletions
4
...ion.Functions/Models/Debug/SubjectInfo.cs → ...ent.Models/MatchPrediction/SubjectInfo.cs
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Original file line number | Diff line number | Diff line change |
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using Newtonsoft.Json; | ||
using Polly; | ||
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namespace Atlas.ManualTesting.Common.Services | ||
{ | ||
public class AtlasHttpResult<TResult> | ||
{ | ||
public bool WasSuccess => Result != null; | ||
public TResult? Result { get; set; } | ||
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public AtlasHttpResult(TResult? result) | ||
{ | ||
Result = result; | ||
} | ||
} | ||
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public abstract class AtlasHttpRequester | ||
{ | ||
private readonly HttpClient httpRequestClient; | ||
private readonly string requestUrl; | ||
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protected AtlasHttpRequester(HttpClient httpRequestClient, string requestUrl) | ||
{ | ||
this.httpRequestClient = httpRequestClient; | ||
this.requestUrl = requestUrl; | ||
} | ||
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protected async Task<AtlasHttpResult<TResult>> PostRequest<TRequest, TResult>(TRequest request) | ||
{ | ||
var retryPolicy = Policy.Handle<Exception>().RetryAsync(10); | ||
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var requestResponse = await retryPolicy.ExecuteAndCaptureAsync( | ||
async () => await SendRequest<TRequest, TResult>(request)); | ||
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return new AtlasHttpResult<TResult>(requestResponse.Result); | ||
} | ||
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private async Task<TResult?> SendRequest<TRequest, TResult>(TRequest request) | ||
{ | ||
try | ||
{ | ||
var response = await httpRequestClient.PostAsync( | ||
requestUrl, new StringContent(JsonConvert.SerializeObject(request))); | ||
response.EnsureSuccessStatusCode(); | ||
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return JsonConvert.DeserializeObject<TResult>(await response.Content.ReadAsStringAsync()); | ||
} | ||
catch (Exception ex) | ||
{ | ||
System.Diagnostics.Debug.WriteLine($"Failed to send request {request}. Details: {ex.Message} " + | ||
"Re-attempting until success or re-attempt count reached."); | ||
throw; | ||
} | ||
} | ||
} | ||
} |
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2 changes: 1 addition & 1 deletion
2
Atlas.MatchPrediction.Functions/Functions/Debug/GenotypeLikelihoodFunctions.cs
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