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How-To view remotely-located Genomic Data Format files in JBrowse
The following how-to explains the steps to prepare and upload tabix-indexed Genomic Data Format (GFF3, BED, VCF) files or other indexed/binary file formats (BAM and BigWig) into the CyVerse Data Store and visualize them in a Genome Browser instance like JBrowse.
- Background Information
- Requirements
- Connect to the CyVerse Data Store via iCommands (one-time)
- Processing, Storing and Viewing the data in JBrowse
- Genomic Feature Format (GFF3) files
- Browser Extensible Data (BED) files
- Variant Call Format (VCF) files
- Sequence Alignment/Map Format (SAM/BAM) files
- bigWig files
If you have any questions regarding the process described above, please write to mailto:araport@jcvi.org