Make a thorough review of files and folders to delete in services.json

[Shettland]

Some templates have been updated (leaving the latter files/folders outdated) while others do not have the proper files/samples to clean correctly assigned from the beggining in services.json.
e.g. In assembly template, the name of the folder is now "01-processing"
["folders":["01-preprocessing/trimmed_sequences"],](

buisciii-tools/bu_isciii/templates/services.json

Line 11 in d95b738

"folders":["01-preprocessing/trimmed_sequences"],

)

[jaimeozaez]

Here there is a problem. When we run the “finish” function of the buisciii-tools, it runs first clean, then scratch_to_service, then rename_no_copy and finally the copy-sftp.

The point is that the clean function (which is executed in scratch) includes the _DEL tag in the folders that have been emptied, but there is still a copy of the same folder in /data/bi, and this folder remains unrenamed, so it ends up being copied to the sftp.

Maybe it would be a good option to include the renaming (_DEL) of the folders inside the rename_no_copy function.

[jaimeozaez]

Done!