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Add debian package bowtie2/2.3.4.3-1-deb/Dockerfile
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osallou committed Aug 19, 2019
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21 changes: 21 additions & 0 deletions bowtie2/2.3.4.3-1-deb/Dockerfile
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FROM biocontainers/biocontainers:vdebian-buster-backports_cv1
MAINTAINER biocontainers <biodocker@gmail.com>
LABEL software="bowtie2" \
base_image="biocontainers/biocontainers:vdebian-buster-backports_cv1" \
container="bowtie2" \
about.summary="ultrafast memory-efficient short read aligner" \
about.home="http://bowtie-bio.sourceforge.net/bowtie2" \
software.version="2.3.4.3-1-deb" \
upstream.version="2.3.4.3" \
version="1" \
extra.identifiers.biotools="bowtie2" \
about.copyright=" 2009-2016 Ben Langmead, C. Trapnell, M. Pop, Steven L. Salzberg" \
about.license="GPL-3.0+" \
about.license_file="/usr/share/doc/bowtie2/copyright" \
extra.binaries="/usr/bin/bowtie2,/usr/bin/bowtie2-align-l,/usr/bin/bowtie2-align-s,/usr/bin/bowtie2-build,/usr/bin/bowtie2-build-l,/usr/bin/bowtie2-build-s,/usr/bin/bowtie2-inspect,/usr/bin/bowtie2-inspect-l,/usr/bin/bowtie2-inspect-s" \
about.tags="biology::nucleic-acids, field::biology, field::biology:bioinformatics,:c++, interface::commandline, role::program,:comparing, works-with::biological-sequence"

USER root
ENV DEBIAN_FRONTEND noninteractive
RUN apt-get update && (apt-get install -t buster-backports -y bowtie2 || apt-get install -y bowtie2) && apt-get clean && apt-get purge && rm -rf /var/lib/apt/lists/* /tmp/*
USER biodocker

1 comment on commit 55fe738

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No bowtie2/2.3.4.3-1-deb/test-cmds.txt (test file) present, skipping tests

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