MODA

[fairmiracle]

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• Repository: https://github.com/fairmiracle/MODA

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[bioc-issue-bot]

Hi @fairmiracle

Thanks for submitting your package. We are taking a quick
look at it and you will hear back from us soon.

The DESCRIPTION file for this package is:

Package: MODA
Type: Package
Title: MODA: MOdule Differential Analysis for weighted gene
        co-expression network
Version: 0.99.4
Date: 2016-06-22
Author: Dong Li, James B. Brown, Luisa Orsini, Zhisong Pan, Guyu Hu and Shan He
Maintainer: Dong Li <dxl466@cs.bham.ac.uk>
Description: MODA can be used to estimate and construct condition-specific gene
    co-expression networks, and identify differentially expressed subnetworks as
    conserved or condition specific modules which are potentially associated with
    relevant biological processes.
License: GPL (>= 2)
Depends: R (>= 3.1.0)
Imports: WGCNA,dynamicTreeCut,igraph
RoxygenNote: 5.0.1
biocViews: GeneExpression, Microarray, DifferentialExpression, Network
Suggests: BiocStyle

[mtmorgan]

@fairmiracle can you clarify the relationship between this package and AMOUNTAIN? Are they to be considered two independent software packages?

[mtmorgan]

This package is already under review in the original tracker. I'm closing this issue.

[fairmiracle]

Yes, they are two different packages. Both of them were initially submitted
to the old system tracker before, MODA has been assigned to Martin and
AMOUNTAIN to Dan. It seems that I should not open new issues for them since
they are under review now. Sorry about the usage of new system.

Best regards,

Dong

---

Dong Li
PhD student at School of Computer Science
The University of Birmingham, UK

On 28 June 2016 at 21:28, Martin Morgan notifications@github.com wrote:

@fairmiracle https://github.com/fairmiracle can you clarify the
relationship between this package and AMOUNTAIN? Are they to be considered
two independent software packages?

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[fairmiracle]

Hi Martin

How to update these two packages? Still through the old tracker?

Best regards,

Dong

---

Dong Li
PhD student at School of Computer Science
The University of Birmingham, UK

On 28 June 2016 at 21:30, Martin Morgan notifications@github.com wrote:

This package is already under review in the original tracker. I'm closing
this issue.

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[mtmorgan]

yes increment the version number (to 0.99.5) and update the existing issue on the old tracker