setup.py

# -*- coding: utf-8 -*-
__revision__ = "$Id$"
import sys
import os
from setuptools import setup, find_packages
import glob

_MAJOR               = 0
_MINOR               = 9
_MICRO               = 11
version              = '%d.%d.%d' % (_MAJOR, _MINOR, _MICRO)
release              = '%d.%d' % (_MAJOR, _MINOR)

metainfo = {
    'authors': {
        'Cokelaer':('Thomas Cokelaer','thomas.cokelaer@pasteur.fr'),
        },
    'version': version,
    'license' : 'BSD',
    'download_url' : ['http://pypi.python.org/pypi/fragment_analyser'],
    'url' : ['http://pypi.python.org/pypi/gdsctools'],
    'description': 'tools to interpret output data from Fragment Analyser Machines' ,
    'platforms' : ['Linux', 'Unix', 'MacOsX', 'Windows'],
    'keywords' : ['genome', 'DNA', 'Fragment'],
    'classifiers' : [
          'Development Status :: 1 - Planning',
          'Intended Audience :: Developers',
          'Intended Audience :: Science/Research',
          'License :: OSI Approved :: BSD License',
          'Operating System :: OS Independent',
          'Programming Language :: Python :: 2.7',
          'Topic :: Software Development :: Libraries :: Python Modules',
          'Topic :: Scientific/Engineering :: Bio-Informatics',
          'Topic :: Scientific/Engineering :: Information Analysis',
          'Topic :: Scientific/Engineering :: Mathematics',
          'Topic :: Scientific/Engineering :: Physics']
    }



with open('README.rst') as f:
    readme = f.read()

from distutils.core import setup, Extension


on_rtd = os.environ.get('READTHEDOCS', None) == 'True'


# on rtd, pandas is 1.3.1 cannot use something better for now
if on_rtd is True:  # only import and set the theme if we're building docs
    install_requires = ['colormap', 'easydev']
else:
    install_requires = ['numpy', 'matplotlib>=1.4.3', 'pandas>=0.16.2', 'easydev>=0.9.5', ],

packages = find_packages(exclude=("", "test"))


setup(
    name             = 'fragment_analyser',
    version          = version,
    maintainer       = metainfo['authors']['Cokelaer'][0],
    maintainer_email = metainfo['authors']['Cokelaer'][1],
    author           = metainfo['authors']['Cokelaer'][0],
    author_email     = metainfo['authors']['Cokelaer'][1],
    long_description = readme,
    keywords         = metainfo['keywords'],
    description = metainfo['description'],
    license          = metainfo['license'],
    platforms        = metainfo['platforms'],
    url              = metainfo['url'],
    download_url     = metainfo['download_url'],
    classifiers      = metainfo['classifiers'],

    # package installation
    packages = packages,

    zip_safe=False,

    # here below '': pattern means include that pattern in all packages
    # so '' :['README.rst'] will include all README.rst recursively
    exclude_package_data = {"": ["__pycache__"]},
    package_data = {
        'fragment_analyser.data' : ['*.txt', '*.csv', '*.tsv', '*.gz', 'README.rst'],
        'fragment_analyser.data.alternate' : ['*.csv'],
        'fragment_analyser.data.examples' : ['*.csv'],
        'fragment_analyser.data.standard_mix_cases' : ['*.csv'],
        'fragment_analyser.data.standard_with_flat_cases' : ['*.csv'],
        '' : ['README.rst'],
        },

    # comment the requirements otherwise RTD fails
    # but we then need a requirements.txt file !
    install_requires = install_requires,
    entry_points = {
        'console_scripts': [
        'fragment_analyser=fragment_analyser.pipelines:main',]
        },
    )