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Section of Biomedical Image Analysis Department of Radiology University of Pennsylvania 3600 Market Street, Suite 380 Philadelphia, PA 19104

Web: http://www.cbica.upenn.edu/sbia/ Email: sbia-software at uphs.upenn.edu

Copyright (c) 2011-2014 University of Pennsylvania. All rights reserved. See http://www.cbica.upenn.edu/sbia/software/license.html or COPYING file.

INTRODUCTION

The Multi Atlas Skull-Stripping (MASS) is brain extraction algorithm based on a multiple-atlas registration framework which provides a robust and accurate brain extraction tool applicable for both small and large population studies.

PACKAGE OVERVIEW

Source Package

  • CTestConfig.cmake Dashboard configuration file.

  • CMakeLists.txt Root CMake configuration file.

  • config/ Package configuration files.

  • data/ Contains the template images.

  • doc/ Software documentation such as the software manual.

  • src/ Source code files.

  • test/ Software build testing files.

  • MASS_Software_Manual.pdf Software manual in pdf format.

  • AUTHORS.txt List of authors, advisors, contributors and testers.

  • COPYING.txt The copyright and license notices.

  • README.txt This readme file.

  • INSTALL.txt The installation instructions for the software package.

  • ChangeLog.txt Software change log history.

Binary Package

Please refer to the INSTALL file for details on where the built executables and libraries, the auxiliary data, and the documentation files are installed.

LICENSING

See http://www.cbica.upenn.edu/sbia/software/license.html or COPYING file.

INSTALLATION

See build and installation instructions given in the INSTALL file.

DOCUMENTATION

See the software manual for details on the software including a demonstration of how to apply the software tools provided by this package.

REFERENCES

[1] Jimit Doshi, Guray Erus, Yangming Ou, Bilwaj Gaonkar, Christos Davatzikos. Multi-Atlas Skull-Stripping, MASS. Academic radiology 20 (12), 1566-1576

[2] Yangming Ou, Aristeidis Sotiras, Nikos Paragios, Christos Davatzikos. DRAMMS: Deformable registration via attribute matching and mutual-saliency weighting. Medical Image Analysis 15(4): 622-639 (2011).

[3] Yangming Ou, Christos Davatzikos. DRAMMS: Deformable Registration via Attribute Matching and Mutual-Saliency Weighting. IPMI 2009: 50-62.

[4] Yangming Ou, Dong Hye Ye, Kilian M. Pohl, Christos Davatzikos. Validation of DRAMMS among 12 Popular Methods in Cross-Subject Cardiac MRI Registration. WBIR 2012: 209-219.