Merge pull request #401 from jlac/activeDev

fixed bug in WES BED file generation
CCBR · Jan 31, 2019 · 1d20ea1 · 1d20ea1
2 parents cb2fedc + ae0d41f
commit 1d20ea1
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/Results-template/Scripts/reformat_bed.pl b/Results-template/Scripts/reformat_bed.pl
@@ -9,13 +9,14 @@
 
 my $outfile = 'exome_targets.bed';
 my $freecout = 'freec_targets.bed';
-open C, ">$outfile";
-open D, ">$freecout";
 
 my $infile = $ARGV[0];
 my @line = ();
 
-open U, "<$infile";
+open U, "<$infile" or die;
+open C, ">$outfile";
+open D, ">$freecout";
+
 while (<U>){
 	chomp;
   	last if m/^$/;