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Merge pull request #342 from jlac/activeDev
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updated mm10 version of the snpeff reference genome
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@jlac
jlac committed Sep 6, 2018
2 parents 1b52c7d + 2a7e1cb commit c4211e8
Showing 1 changed file with 2 additions and 2 deletions.
4 changes: 2 additions & 2 deletions mm10.json
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Original file line number Diff line number Diff line change
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"SNP138": "/data/CCBR_Pipeliner/db/PipeDB/lib/mm10_allstrains_dbSNP142.vcf.gz",
"REFFLAT": "/data/CCBR_Pipeliner/db/PipeDB/lib/SS_mouse_exome_mm10_reformat.bed",
"SNPEFF_CONFIG": "/usr/local/apps/snpEff/4.3t/snpEff.config",
"SNPEFF_GENOME": "GRCm38.82",
"SNPEFF_GENOME": "GRCm38.86",
"FILTERSIFT": "( QUAL >= 20 )",
"MUTECTGENOME": "/fdb/igenomes/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa",
"MUTECTVARIANTS": "--dbsnp /data/CCBR_Pipeliner/db/PipeDB/lib/mm10_allstrains_dbSNP142.vcf.gz",
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"SNP138": "/data/CCBR_Pipeliner/db/PipeDB/lib/mm10_allstrains_dbSNP142.vcf.gz",
"REFFLAT": "/data/CCBR_Pipeliner/db/PipeDB/lib/SS_mouse_exome_mm10_reformat.bed",
"SNPEFF_CONFIG": "/usr/local/apps/snpEff/4.3t/snpEff.config",
"SNPEFF_GENOME": "GRCm38.82",
"SNPEFF_GENOME": "GRCm38.86",
"FILTERSIFT": "( QUAL >= 20 )",
"MUTECTGENOME": "/fdb/igenomes/Mus_musculus/UCSC/mm10/Sequence/WholeGenomeFasta/genome.fa",
"MUTECTVARIANTS": "--dbsnp /data/CCBR_Pipeliner/db/PipeDB/lib/mm10_allstrains_dbSNP142.vcf.gz",
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