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GNPS_GC_libraries #789
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We are in the process of revamping our GNPS GC library visualizations to make browsing easier. For adding GC libraries, you can follow this guide here: https://ccms-ucsd.github.io/GNPSDocumentation/batchupload/ Hope this helps and hopefully our new interface is out soon after ASMS. |
Thank you very much for your reply. They are very helpful. |
I believe ClassyFire and NP Classifer should be integrated directly into GNPS. Those would be the tools I would recommend. |
Hi Ming, |
This will be a totally new library, but if you're running the
batch validation workflow:
https://gnps.ucsd.edu/ProteoSAFe/index.jsp?params=%7B%22workflow%22:%22ADD-BATCH-ANNOTATED-VALIDATOR%22%7D
You shouldn't need to select a target library anyway.
Best,
Ming
…On Mon, Nov 1, 2021 at 6:29 AM lydia1201 ***@***.***> wrote:
We are in the process of revamping our GNPS GC library visualizations to
make browsing easier. For adding GC libraries, you can follow this guide
here:
https://ccms-ucsd.github.io/GNPSDocumentation/batchupload/
Hope this helps and hopefully our new interface is out soon after ASMS.
Hi Ming,
When I was trying to add annotations to the GNP-GC-MS libraries, I found
that the input libraries don't have the GNPS-GC-libraries, I was wondering
whether the spectrum will be add to the GC-MS libraries or not?
[image: image]
<https://user-images.githubusercontent.com/71855567/139679346-84a5f252-e55b-48f6-9a74-6175e567a84f.png>
Thank you
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Besides downloading the mgf file, I was wondering if there is a way to get access to the GNPS_GC_libraries and perform queries to see whether certain volatile compounds are in the library or not,
I was also wondering how to add new annotations to the GNPS GC-MS libraries.
Thank you very much
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