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mac nightlies seem broken #26

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doutriaux1 opened this issue Oct 1, 2018 · 4 comments
Closed

mac nightlies seem broken #26

doutriaux1 opened this issue Oct 1, 2018 · 4 comments
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@doutriaux1
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doutriaux1 commented Oct 1, 2018

ImportError: dlopen(/Users/doutriaux1/anaconda2/envs/py3_dan_vtk/lib/python3.6/site-packages/cdtime.cpython-36m-darwin.so, 2): Library not loaded: @rpath/libc++.1.dylib
  Referenced from: /Users/doutriaux1/anaconda2/envs/py3_dan_vtk/lib/python3.6/site-packages/cdtime.cpython-36m-darwin.so
  Reason: image not found
(py3_dan_vtk) doutriaux1@loki:[recipes]:[master*]:[40331]> conda list cdtime
# packages in environment at /Users/doutriaux1/anaconda2/envs/py3_dan_vtk:
#
# Name                    Version                   Build  Channel
cdtime                    3.0.2018.09.25.18.17.gf5ef3bc  py36hdc02c5d_0    cdat/label/nightly
@doutriaux1
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doutriaux1 commented Oct 1, 2018

`conda info`

``` active environment : py3_dan_vtk active env location : /Users/doutriaux1/anaconda2/envs/py3_dan_vtk shell level : 1 user config file : /Users/doutriaux1/.condarc populated config files : /Users/doutriaux1/.condarc conda version : 4.5.11 conda-build version : 3.11.0 python version : 2.7.14.final.0 base environment : /Users/doutriaux1/anaconda2 (writable) channel URLs : https://repo.anaconda.com/pkgs/main/osx-64 https://repo.anaconda.com/pkgs/main/noarch https://repo.anaconda.com/pkgs/free/osx-64 https://repo.anaconda.com/pkgs/free/noarch https://repo.anaconda.com/pkgs/r/osx-64 https://repo.anaconda.com/pkgs/r/noarch https://repo.anaconda.com/pkgs/pro/osx-64 https://repo.anaconda.com/pkgs/pro/noarch package cache : /Users/doutriaux1/anaconda2/pkgs /Users/doutriaux1/.conda/pkgs envs directories : /Users/doutriaux1/anaconda2/envs /Users/doutriaux1/.conda/envs platform : osx-64 user-agent : conda/4.5.11 requests/2.18.4 CPython/2.7.14 Darwin/17.7.0 OSX/10.13.6 UID:GID : 45773:45773 netrc file : None offline mode : False ```

`conda list`

``` # packages in environment at /Users/doutriaux1/anaconda2/envs/py3_dan_vtk: # # Name Version Build Channel alembic 0.9.9 py_0 conda-forge appnope 0.1.0 py36_0 conda-forge asn1crypto 0.24.0 py36_3 conda-forge async_generator 1.10 py_0 conda-forge autopep8 1.4 py_0 conda-forge backcall 0.1.0 py_0 conda-forge blas 1.0 mkl defaults bleach 2.1.4 py_1 conda-forge bzip2 1.0.6 1 conda-forge ca-certificates 2018.8.24 ha4d7672_0 conda-forge cdat_info 8.0.2018.08.30.07.08.ge7b080a py36_0 cdat/label/nightly cdms2 3.0.2018.09.27.10.46.g199ef13 py36hdde6e19_0 cdat/label/nightly cdtime 3.0.2018.09.25.18.17.gf5ef3bc py36hdc02c5d_0 cdat/label/nightly cdutil 8.0.2018.09.10.12.55.gfe08f16 py36_0 cdat/label/nightly certifi 2018.8.24 py36_1001 conda-forge cffi 1.11.5 py36h5e8e0c9_1 conda-forge chardet 3.0.4 py36_3 conda-forge clapack 3.2.1 h470a237_1 conda-forge configurable-http-proxy 1.3.0 0 conda-forge cryptography 2.3.1 py36hdffb7b8_0 conda-forge cryptography-vectors 2.3.1 py36_0 conda-forge curl 7.61.0 h93b3f91_2 conda-forge decorator 4.3.0 py_0 conda-forge distarray 2.12.2 py36_0 conda-forge dv3d 8.0.2018.07.17.08.45.ge79b355 py36_0 cdat/label/nightly entrypoints 0.2.3 py36_2 conda-forge esmf 7.1.0r h35eb876_3 conda-forge esmpy 7.1.0r py36_1 conda-forge expat 2.2.5 hfc679d8_2 conda-forge ffmpeg 4.0.2 ha6a6e2b_0 conda-forge flake8 3.5.0 py36_0 conda-forge freetype 2.8.1 hfa320df_1 conda-forge future 0.16.0 py36_2 conda-forge g2clib 1.6.0 3 conda-forge genutil 8.1.2018.07.23.17.43.gc18c308.npy1.14 py36h776bbcc_0 cdat/label/nightly gettext 0.19.8.1 h1f1d5ed_1 conda-forge gmp 6.1.2 hfc679d8_0 conda-forge gnutls 3.5.19 h2a4e5f8_1 conda-forge hdf4 4.2.13 h951d187_2 conda-forge hdf5 1.10.3 hc401514_2 conda-forge html5lib 1.0.1 py_0 conda-forge icu 58.2 hfc679d8_0 conda-forge idna 2.7 py36_2 conda-forge intel-openmp 2019.0 118 defaults ipykernel 5.0.0 pyh24bf2e0_1 conda-forge ipython 7.0.1 py36h24bf2e0_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 7.4.2 py_0 conda-forge jasper 1.900.1 hff1ad4c_5 conda-forge jedi 0.12.1 py36_0 conda-forge jinja2 2.10 py_1 conda-forge jpeg 9c h470a237_1 conda-forge jsonschema 2.6.0 py36_2 conda-forge jupyter 1.0.0 py_1 conda-forge jupyter_client 5.2.3 py_1 conda-forge jupyter_console 5.1.0 py36_0 conda-forge jupyter_core 4.4.0 py_0 conda-forge jupyterhub 0.9.4 py36_0 conda-forge jupyterlab 0.34.12 py36_0 conda-forge jupyterlab_launcher 0.13.1 py_2 conda-forge krb5 1.14.6 0 conda-forge lapack 3.6.1 1 conda-forge libcdms 3.0.2018.06.27.23.30.g51e6ae4 hdc02c5d_0 cdat/label/nightly libcf 3.0.2018.06.27.19.10.g994aa30 py36h1de35cc_0 cdat/label/nightly libcurl 7.61.1 hf30b1f0_0 defaults libdrs 3.0.2018.06.27.18.53.gb964d89 hdc02c5d_0 cdat/label/nightly libdrs_f 3.0.2018.06.27.18.53.gb964d89 hdc02c5d_0 cdat/label/nightly libffi 3.2.1 hfc679d8_5 conda-forge libgfortran 3.0.1 h93005f0_2 defaults libiconv 1.15 h470a237_3 conda-forge libnetcdf 4.6.1 h350cafa_10 conda-forge libpng 1.6.35 ha92aebf_2 conda-forge libsodium 1.0.16 h470a237_1 conda-forge libssh2 1.8.0 h5b517e9_2 conda-forge libtiff 4.0.9 he6b73bb_2 conda-forge mako 1.0.7 py_1 conda-forge markupsafe 1.0 py36h470a237_1 conda-forge mccabe 0.6.1 py_1 conda-forge mesalib 17.3.9 hdd5ec5b_0 conda-forge mistune 0.8.3 py36h470a237_2 conda-forge mkl 2019.0 118 defaults mkl_fft 1.0.6 py36_0 conda-forge mkl_random 1.0.1 py36_0 conda-forge mpi 1.0 mpich conda-forge mpich 3.2.1 h26a2512_4 conda-forge nb_conda 2.2.1 py36_0 conda-forge nb_conda_kernels 2.1.1 py36_1 conda-forge nbconvert 5.3.1 py_1 conda-forge nbformat 4.4.0 py_1 conda-forge ncurses 6.1 hfc679d8_1 conda-forge netcdf-fortran 4.4.4 h71ea97b_10 conda-forge nettle 3.3 0 conda-forge nodejs 10.8.0 hfc679d8_1 conda-forge notebook 5.7.0 py36_0 conda-forge numpy 1.15.2 py36h6a91979_0 defaults numpy-base 1.15.2 py36h8a80b8c_0 defaults openh264 1.7.0 0 conda-forge openssl 1.0.2p h470a237_0 conda-forge ossuuid 1.6.2 hfc679d8_0 conda-forge pamela 0.3.0 py36_0 conda-forge pandoc 2.3.1 0 conda-forge pandocfilters 1.4.2 py_1 conda-forge parso 0.3.1 py_0 conda-forge pexpect 4.6.0 py36_0 conda-forge pickleshare 0.7.5 py36_0 conda-forge pip 18.0 py36_1 conda-forge prometheus_client 0.3.1 py_1 conda-forge prompt_toolkit 2.0.5 py_0 conda-forge ptyprocess 0.6.0 py36_1000 conda-forge pycodestyle 2.3.1 py_1 conda-forge pycparser 2.19 py_0 conda-forge pycurl 7.43.0.2 py36hdbc3d79_0 defaults pyflakes 1.6.0 py_1 conda-forge pygments 2.2.0 py_1 conda-forge pyopenssl 18.0.0 py36_0 conda-forge pyqt 5.6.0 py36h8210e8a_7 conda-forge pysocks 1.6.8 py36_2 conda-forge python 3.6.6 h5001a0f_0 conda-forge python-dateutil 2.7.3 py_0 conda-forge python-editor 1.0.3 py_0 conda-forge python-oauth2 1.1.0 py36_0 conda-forge pyzmq 17.1.2 py36hae99301_0 conda-forge qt 5.6.2 hd4c90f3_9 conda-forge qtconsole 4.4.1 py36_1 conda-forge readline 7.0 haf1bffa_1 conda-forge requests 2.19.1 py36_1 conda-forge send2trash 1.5.0 py_0 conda-forge setuptools 40.4.0 py36_1000 conda-forge simplegeneric 0.8.1 py_1 conda-forge sip 4.18.1 py36hfc679d8_0 conda-forge six 1.11.0 py36_1 conda-forge sqlalchemy 1.2.12 py36h470a237_0 conda-forge sqlite 3.25.2 hb1c47c0_0 conda-forge terminado 0.8.1 py36_1 conda-forge testpath 0.4.1 py36_0 conda-forge tk 8.6.8 ha92aebf_0 conda-forge tornado 5.1.1 py36h470a237_0 conda-forge traitlets 4.3.2 py36_0 conda-forge udunits2 2.2.27.6 h3a4f0e9_1 conda-forge urllib3 1.23 py36_1 conda-forge vcs 8.0.2018.07.02.23.26.g5bc0c4f8 py36_0 cdat/label/nightly vtk-cdat 8.1.1.2839.8.0.2018.09.29.23.15.g80633bad3a py36_mesalibhcd686f7_0 [mesalib] danlipsa wcwidth 0.1.7 py_1 conda-forge webencodings 0.5.1 py_1 conda-forge wheel 0.31.1 py36_1001 conda-forge widgetsnbextension 3.4.2 py36_0 conda-forge x264 1!152.20180717 h470a237_1 conda-forge xz 5.2.4 h470a237_1 conda-forge zeromq 4.2.5 hfc679d8_5 conda-forge zlib 1.2.11 h470a237_3 conda-forge ```

@dnadeau4
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dnadeau4 commented Oct 25, 2018

@doutriaux1 what is the error?
can you run cdtime test?

@doutriaux1
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doutriaux1 commented Oct 25, 2018

I get that systematically on mym mac. I just yanked everything and started with miniconda3 let me try again.

@doutriaux1
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doutriaux1 commented Oct 25, 2018

yes works fine with my new conda env, closing

@doutriaux1 doutriaux1 added this to the 3.1 milestone Feb 27, 2019
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