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Parallel processing of samples in Varpipe_wgs #17

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DrB-S opened this issue Jan 22, 2024 · 0 comments
Open

Parallel processing of samples in Varpipe_wgs #17

DrB-S opened this issue Jan 22, 2024 · 0 comments

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@DrB-S
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DrB-S commented Jan 22, 2024

Is your feature request related to a problem? Please describe.
I am running Varpipe_wgs with Singularity on ~150 TB samples on an AWS server.
I have set threads to 40 on the command-line (./runVarpipeline.sh 40), and it is running ~3-4 samples/hr.

Is there a way to set it to run multiple samples in parallel to speed things up?
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@DrB-S