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updated the docs and moved non-assays to components directory (#50)
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@jim-bo
jim-bo committed Jun 5, 2019
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42 changes: 17 additions & 25 deletions docs/docs/index.html
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Expand Up @@ -116,35 +116,23 @@ <h5>Schemas > Assays</h5>
</thead>

<tr>
<td width=25%><a href='schemas.assays.micsss_assay.html'>MICSSS</a></td>
<td>Base information about the aquisition and analysis of a quantitative pathology image
</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.ngs_assay.html'>NGS Sequencing Assay</a></td>
<td>Additional properties to describe a NGS Sequencing Experiment.</td>
<td width=25%><a href='schemas.assays.micsss_assay.html'>MICSSS Assay</a></td>
<td>Multiplexed immunohistochemical consecutive staining on single slide</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.wes_assay.html'>Whole Exome Sequencing Assay</a></td>
<td>Additional properties to describe a Whole Exome Sequencing Assay.</td>
<td>Whole Exome Sequencing Assay</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.mif_assay.html'>MIF</a></td>
<td>Base information about the aquisition and analysis of a quantitative pathology image
</td>
<td width=25%><a href='schemas.assays.mif_assay.html'>mIF Assay</a></td>
<td>Multiplex immunoflourescence</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.assay_core.html'>Assay Core</a></td>
<td>Main properties of the assay experiment template</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.olink_assay.html'>olink Assay</a></td>
<td>Additional properties to describe an olink Experiment.</td>
<td width=25%><a href='schemas.assays.olink_assay.html'>OLink Assay</a></td>
<td>High-throughput multiplexed assays for protein biomarker discovery</td>
</tr>

<tr>
Expand Down Expand Up @@ -172,25 +160,29 @@ <h5>Schemas > Assays > Components</h5>
</tr>

<tr>
<td width=25%><a href='schemas.assays.components.micsss_antibody.html'>Multiplexed immunohistochemical consecutive staining on single slide</a></td>
<td width=25%><a href='schemas.assays.components.micsss_antibody.html'>MICSSS antibody</a></td>
<td>Data specific to antibody prepration on the multiplex immunohistochemical platform
</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.components.image.html'>Image</a></td>
<td>Base information about the aquisition and analysis of a quantitative pathology image
</td>
<td width=25%><a href='schemas.assays.components.ngs.html'>NGS Sequencing</a></td>
<td>Common properties for NGS Sequencing sxperiments.</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.components.identifiers.html'>Image</a></td>
<td width=25%><a href='schemas.assays.components.assay_core.html'>Assay Core</a></td>
<td>Main properties of the assay experiment template</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.components.image.html'>Image</a></td>
<td>Base information about the aquisition and analysis of a quantitative pathology image
</td>
</tr>

<tr>
<td width=25%><a href='schemas.assays.components.mif_antibody.html'>Multiplex Immunoflourescence Antibody</a></td>
<td width=25%><a href='schemas.assays.components.mif_antibody.html'>mIF antibody</a></td>
<td>Data specific to antibody prepration on the multiplex immunoflourescence platform.</td>
</tr>

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143 changes: 143 additions & 0 deletions docs/docs/schemas.assays.components.assay_core.html
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@@ -0,0 +1,143 @@

<!DOCTYPE html>
<html>
<head>
<title>CIDC Schemas</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<link rel="stylesheet" href="https://stackpath.bootstrapcdn.com/bootstrap/4.3.1/css/bootstrap.min.css" integrity="sha384-ggOyR0iXCbMQv3Xipma34MD+dH/1fQ784/j6cY/iJTQUOhcWr7x9JvoRxT2MZw1T" crossorigin="anonymous">
<style>
.bd-placeholder-img {
font-size: 1.125rem;
text-anchor: middle;
-webkit-user-select: none;
-moz-user-select: none;
-ms-user-select: none;
user-select: none;
}

@media (min-width: 768px) {
.bd-placeholder-img-lg {
font-size: 3.5rem;
}
}
</style>
</head>
<body>
<main role="main">



<div class="container">
<p>
<a href="index.html">CIDC Data Model</a>
</p>
<h1>Assay Core</h1>
<p>
<b>Description:</b> Main properties of the assay experiment template
</p>

<p>
Each Assay Core is <b>linked</b> to:
<ul>

<li>exactly_one
<a href='schemas.assays.components.artifact.html'>
artifact
</a>
</li>

</ul>
</p>

</div>

<div class="container">
<h3>Properties</h3>





<table class="table table-striped">
<thead>
<tr>
<th>Property</th>
<th>Description</th>
<th>Data Type</th>
<th>Required/Optional</th>
</tr>
</thead>

<tr>
<td><a name="assay_creator"></a>assay_creator</td>
<td width=25%>

</td>
<td>

&lt;string&gt;
<ul>

</ul>

</td>
<td>

optional

</td>
</tr>

<tr>
<td><a name="assay_creator_preferred_email"></a>assay_creator_preferred_email</td>
<td width=25%>

</td>
<td>

&lt;string&gt;
<ul>

</ul>

</td>
<td>

optional

</td>
</tr>

<tr>
<td><a name="uploader"></a>uploader</td>
<td width=25%>

</td>
<td>

&lt;string&gt;
<ul>

</ul>

</td>
<td>

required

</td>
</tr>

</table>


</div>


</main>
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</body>
</html>

2 changes: 1 addition & 1 deletion docs/docs/schemas.assays.components.micsss_antibody.html
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Expand Up @@ -31,7 +31,7 @@
<p>
<a href="index.html">CIDC Data Model</a>
</p>
<h1>Multiplexed immunohistochemical consecutive staining on single slide</h1>
<h1>MICSSS antibody</h1>
<p>
<b>Description:</b> Data specific to antibody prepration on the multiplex immunohistochemical platform

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2 changes: 1 addition & 1 deletion docs/docs/schemas.assays.components.mif_antibody.html
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Expand Up @@ -31,7 +31,7 @@
<p>
<a href="index.html">CIDC Data Model</a>
</p>
<h1>Multiplex Immunoflourescence Antibody</h1>
<h1>mIF antibody</h1>
<p>
<b>Description:</b> Data specific to antibody prepration on the multiplex immunoflourescence platform.
</p>
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