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@CIMAC-CIDC

CIMAC-CIDC Immuno-Oncology Biomarkers Network

The CIMAC-CIDC Network is an initiative of the NCI Cancer Moonshot to enhance clinical trials in cancer immune therapies.

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  1. cidc-ngs-pipeline-api cidc-ngs-pipeline-api Public

    Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq

    Python 3 4

  2. cidc-cli cidc-cli Public

    Command line tool for transferring data files to/from the CIDC.

    Python 2 1

  3. cidc-schemas cidc-schemas Public

    CIDC Metadata Schemas

    Python 2 3

  4. cidc-pipelines cidc-pipelines Public archive

    A repo for tracking the versions and composition of CIDC pipelines

    1

  5. cidc-pipeline-prototype cidc-pipeline-prototype Public

    A placeholder pipeline written in Snakemake.

    Python 1

  6. cidc-utils cidc-utils Public archive

    A simple utility package for the CIDC tools, provides convenient shortcut methods for some of the common tasks.

    Python

Repositories

Showing 10 of 21 repositories
  • cidc-schemas Public

    CIDC Metadata Schemas

    CIMAC-CIDC/cidc-schemas’s past year of commit activity
    Python 2 MIT 3 0 1 Updated Mar 20, 2024
  • cidc-ngs-pipeline-api Public

    Specifications and documentation related to CIMAC-CIDC NGS pipelines: WES, RNAseq, TCRseq, ATACseq

    CIMAC-CIDC/cidc-ngs-pipeline-api’s past year of commit activity
    Python 3 4 0 1 Updated Mar 20, 2024
  • cidc-ui Public

    CIDC Data Portal UI

    CIMAC-CIDC/cidc-ui’s past year of commit activity
    TypeScript 0 2 0 17 Updated Oct 4, 2023
  • cidc-api-gae Public

    The CIDC API, running on Google App Engine and Google Cloud SQL

    CIMAC-CIDC/cidc-api-gae’s past year of commit activity
    Python 0 MIT 2 0 1 Updated Aug 16, 2023
  • cidc-cloud-functions Public

    Google Cloud Functions for carrying out event-driven tasks in the CIDC

    CIMAC-CIDC/cidc-cloud-functions’s past year of commit activity
    Python 0 MIT 1 2 3 Updated Jul 15, 2023
  • cidc_wes Public
    CIMAC-CIDC/cidc_wes’s past year of commit activity
    Python 0 0 0 0 Updated Jun 21, 2023
  • cidc-cli Public

    Command line tool for transferring data files to/from the CIDC.

    CIMAC-CIDC/cidc-cli’s past year of commit activity
    Python 2 MIT 1 0 1 Updated May 22, 2023
  • RIMA_automator Public
    CIMAC-CIDC/RIMA_automator’s past year of commit activity
    Python 0 1 0 1 Updated Mar 15, 2023
  • cidc_rima Public
    CIMAC-CIDC/cidc_rima’s past year of commit activity
    R 0 1 0 0 Updated Feb 16, 2023
  • cidc-visualizIRR Public
    CIMAC-CIDC/cidc-visualizIRR’s past year of commit activity
    HTML 0 0 0 0 Updated Dec 15, 2022
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