Fixed dumb options parsing bug

COMBINE-lab · Jun 5, 2015 · a6a4fe0 · a6a4fe0
1 parent 365e2bf
commit a6a4fe0
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/src/SalmonQuantify.cpp b/src/SalmonQuantify.cpp
@@ -2973,7 +2973,7 @@ int salmonQuantify(int argc, char *argv[]) {
     all.add(generic).add(advanced).add(testing);
 
     po::options_description visible("salmon quant options");
-    all.add(generic).add(advanced);
+    visible.add(generic).add(advanced);
 
     po::variables_map vm;
     try {

diff --git a/src/SalmonQuantifyAlignments.cpp b/src/SalmonQuantifyAlignments.cpp
@@ -920,7 +920,7 @@ int salmonAlignmentQuantify(int argc, char* argv[]) {
     all.add(basic).add(advanced).add(testing);
 
     po::options_description visible("salmon quant options");
-    all.add(basic).add(advanced);
+    visible.add(basic).add(advanced);
 
     po::variables_map vm;
     try {