-
Notifications
You must be signed in to change notification settings - Fork 377
/
Makefile.CP2
executable file
·1492 lines (1351 loc) · 70.6 KB
/
Makefile.CP2
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
#
# Makefile for CellProfiler 2 prerequisites
#
# WARNING: this Makefile is unlikely to work correctly for
# CellProfiler revisions much beyond the most recent update to the
# Makefile itself. See the changelog below.
#
# CHANGELOG:
# 0.2.1.leek - 2011.02.14: Lee Kamentsky
# - added gettext package (needed on my system because gettext was version 1.4 and needed 1.7)
# - need patch for ilastik: http://gitorious.org/ilastik/ilastik-0_5_05a/archive-tarball/v0.5.05a
# - hdf5 1.8.5-patch1 no longer available: url now at 1.8.6
#
# 0.2.1 - 2011.02.08: Mario Emmenlauer
# - fixed swig/pcre issue, based on report from Nate Barlow
# - fixed several dependencies to libtiff, zlib, and similar
# - added checks for GIT, and improved all prechecks (robustness)
# - updated many packages, including all gtk sources
# 0.2.0 - 2011.01.30: Mario Emmenlauer
# - First feature-complete version
# - Updated: Python to 2.6.6, UMFpack/AMD/COLMOD, and
# ATLAS to 3.9.33
# - Added: ilastik, libhdf5, h5py, libpng, libboost
# - Changes:
# - Ensure that internal libs are used, not system fallback
# - Build a dynamic Python library (required for ilastik)
# 0.1.5 - 2011.01.24: Mario Emmenlauer
# - downgraded Cython to 0.12.1 after sinificantly more
# problems (related to GIL, likely caused by Cython).
# 0.1.4 - 2011.01.16: Mario Emmenlauer
# - updated several packages (MySQL, Cython, Atlas, Lapack,
# NumPy, Matplotlib, QT, PyQT)
# - fixed small issues here and there
# 0.1.3 - 2010.10.27: Mario Emmenlauer
# - updated SWIG, and GTK to same version as Ubuntu 10.10
# - added PCRE for use by SWIG
# - added gdk-pixbuf for use by GTK
# 0.1.2 - 2010.09.27: Mario Emmenlauer, Lee Kamentsky
# - more consequent use of SRCDIR for all archives
# - fixed several downloads where version number is part of URL
# 0.1.1 - 2010.09.25: Mario Emmenlauer
# - added MySQL and ncurses (prerequisite)
# - use TMPDIR, SRCDIR and PREFIX variables
# - fixed several issues
# 0.1.0 - 2010.09.21: Mario Emmenlauer
# - added GTK and its prerequisites (optional target "gtk")
# - touch downloaded packages to ensure recompile
# 0.0.6 - 2010.09.20: Lee Kamentsky, Mario Emmenlauer
# - fixed missing zlib dependency from Python
# - improved several prechecks (java and environemnt)
# - small other/layout changes
# 0.0.5 - 2010.09.14: Mario Emmenlauer
# - added SWIG to compile list
# - commented unneeded wxGTK package
# - small layout changes (mostly whitespace only)
# 0.0.4 - 2010.09.13: Lee Kamentsky (leek@broadinstitute.org)
# - fixed issue: explicitly enable gfortran for NumPy and SciPy
# - fixed issue: enable wxPython monolitic build
# - 2010.09.13: Mario Emmenlauer
# - added sanity checks for Makefile prerequisites
# - added more documentation, removed outdated package versions
# 0.0.3 - 2010.09.07: Mario Emmenlauer
# - Updated many packages to newest release
# - added source pointer URL for simpler updates
# 0.0.2 - 2010.07.12: Mario Emmenlauer
# - Added missing compile flag --enable-graphics_ctx to wxPython compile
# 0.0.1 - 2010.07.12: Mario Emmenlauer (mario.emmenlauer@unibas.ch)
# - Initial revision
#
# See http://cellprofiler.org for more information on CellProfiler
#
# This Makefile will download, unpack, compile and install all
# prerequisites for CP2, except for Java. It requires a fairly
# recent compiler (gcc) to compile ATLAS with optimal performance.
# Please disable CPU frequency scaling before compilation.
#
# PREREQUISITES:
# - It is recommended to have development files for GTK+. If you don't
# have (or want) GTK+, you can compile with a less optimal user interface
# using the WXUSEGTK="no" parameter for this Makefile.
# RedHat: yum install gtk2-devel
# Debian/Ubuntu: aptitude install libgtk2.0-dev
# Generic: "make gtk" with this Makefile
#
# VARIABLES:
# - set PREFIX to where you want to install your CellProfiler2 directory
#
# USAGE:
# - always invoke 'make' with the name of this Makefile, i.e.:
# make -f Makefile.CP2
# - supply variables that you want to set on the command line, i.e.:
# make -f Makefile.CP2 PREFIX="$HOME/usr/CellProfiler2" ...
# - if you want to first download all sources, use the "download" target:
# make -f Makefile.CP2 download
#
# After installation, you need to run the following every time
# you want to start CellProfiler (or place it in your SHELL
# startup scripts, i.e. ~/.bashrc for bash):
# CP2DEST="$HOME/usr/CellProfiler2"
# export PATH="${CP2DEST}/bin:${PATH}"
# export LD_LIBRARY_PATH="${CP2DEST}/lib:${CP2DEST}/lib64:${LD_LIBRARY_PATH}":${CP2DEST}/lib/mysql
# export PYTHONPATH="${CP2DEST}/lib/python2.5/site-packages:${PYTHONPATH}"
# export JAVA_HOME="<your path to JDK or JRE>"
#
# To run CellProfiler:
# cd ${CP2DEST}
# python CellProfiler.py -b
#
# To run Ilastik:
# python -m ilastik.ilastikMain
#
# MAKE_FLAGS is used for "make" compilation. -jN specifies N parallel
# build jobs for packages that support parallel compilation. Change or
# add other parameters as you like:
MAKE_FLAGS ?= -j4
PREFIX ?= $(HOME)/usr/CellProfiler2
SRCDIR ?= $(PWD)
TMPDIR ?= $(PWD)/tmp
# Set DISABLE_PRECHECKS to "YES" (case sensitive!) to explicitly
# disable prechecks. Disabling is not recommended. It may lead
# to failed builds because of missing/wrong dependencies.
DISABLE_PRECHECKS ?= NO
WXUSEGTK ?= yes
WGETFLAGS ?= --continue --tries=10 --timeout=60 --no-check-certificate
# Versions and prefixes of packages:
CELLPROFILERPREFIX ?= $(PREFIX)
CELLPROFILER_CO_URL = https://github.com/CellProfiler/CellProfiler.git
#PYVERSION = 2.5
PYVERSION = 2.6
#PYTHONVERSION = Python-$(PYVERSION).5
PYTHONVERSION = Python-$(PYVERSION).6
PYTHONPREFIX ?= $(PREFIX)
SITEPKGPREFIX = $(PYTHONPREFIX)/lib/python$(PYVERSION)/site-packages
SWIGVERSION = swig-2.0.1
SWIGPREFIX ?= $(PREFIX)
SWIGURL = http://www.swig.org/download.html
PCREVERSION = pcre-8.12
PCREPREFIX ?= $(PREFIX)
PCREURL = http://www.pcre.org/
PYPIVERSION = setuptools-0.6c11-py$(PYVERSION).egg
PYPIPREFIX ?= $(PREFIX)
PILVERSION = Imaging-1.1.7
PILPREFIX ?= $(PREFIX)
PILURL = http://www.pythonware.com/products/pil/
NCURSESVERSION = ncurses-5.7
NCURSESPREFIX ?= $(PREFIX)
#PYSQLITEVERSION = pysqlite-2.6.0
PYSQLITEVERSION = pysqlite-2.6.1
PYSQLITEPREFIX ?= $(PREFIX)
PYSQLITEURL = http://pypi.python.org/pypi/pysqlite/
#SQLITEVERSION = sqlite-autoconf-3070400
SQLITEVERSION = sqlite-autoconf-3070500
SQLITEPREFIX ?= $(PREFIX)
SQLITEURL = http://www.sqlite.org/download.html
#MYSQLVERSION = mysql-5.1.54
MYSQLVERSION = mysql-5.1.55
MYSQLPREFIX ?= $(PREFIX)
MYSQLURL = http://dev.mysql.com/downloads/mysql/5.1.html
MYSQLPYTHONVERSION = 1.2.3
MYSQLPYTHONURL = http://sourceforge.net/projects/mysql-python/
PYTHONNOSEVERSION = nose-0.11.3
PYTHONNOSEURL = http://code.google.com/p/python-nose/downloads/list
DECORATORVERSION = decorator-3.2.0
CYTHONVERSION = Cython-0.12.1
#CYTHONVERSION = Cython-0.14
CYTHONPREFIX ?= $(PREFIX)
CYTHONURL = http://www.cython.org/#download
#ATLASVERSION = atlas3.9.33
ATLASVERSION = atlas3.9.34
ATLASPREFIX ?= $(PREFIX)
ATLASURL = http://sourceforge.net/projects/math-atlas/files/
LAPACKVERSION = lapack-3.3.0
LAPACKFLAGS = -fPIC -m64
LAPACKURL = http://www.netlib.org/lapack/
VIGRAVERSION = vigra-1.7.1
VIGRAPREFIX ?= $(PREFIX)
VIGRAURL = http://hci.iwr.uni-heidelberg.de/vigra/
ILASTIKMAJVERSION = 0.5
ILASTIKMINVERSION = 05a
ILASTIKVERSION = $(ILASTIKMAJVERSION).$(ILASTIKMINVERSION)
ILASTIKPREFIX ?= $(PREFIX)
ILASTIKURL = http://gitorious.org/ilastik/ilastik-0_5_05a/archive-tarball/v0.5.05a
QIMGTOARRVERSION = qimage2ndarray-1.0
QIMGTOARRPREFIX ?= $(PREFIX)
QIMGTOARRURL = http://kogs-www.informatik.uni-hamburg.de/~meine/software/qimage2ndarray/
HDF5VERSION = hdf5-1.8.6
HDF5PREFIX ?= $(PREFIX)
H5PYVERSION = h5py-1.3.1
H5PYPREFIX ?= $(PREFIX)
H5PYURL = http://code.google.com/p/h5py/downloads/
FFTWVERSION = fftw-3.2.2
FFTWPREFIX ?= $(PREFIX)
NUMPYVERSION = numpy-1.5.1
NUMPYPREFIX ?= $(PREFIX)
NUMPYURL = http://sourceforge.net/projects/numpy/files/
SCIPYVERSION = scipy-0.8.0
SCIPYPREFIX ?= $(PREFIX)
SCIPYURL = http://sourceforge.net/projects/scipy/files/
UMFPACKVERSION = UMFPACK-5.5.1
UMFPACKPREFIX ?= $(PREFIX)
UMFPACKURL = http://www.cise.ufl.edu/research/sparse/umfpack/current/
CAMDVERSION = CAMD-2.2.2
CAMDPREFIX ?= $(PREFIX)
CAMDURL = http://www.cise.ufl.edu/research/sparse/camd/current/
CCOLAMDVERSION = CCOLAMD-2.7.3
CCOLAMDPREFIX ?= $(PREFIX)
CCOLAMDURL = http://www.cise.ufl.edu/research/sparse/ccolamd/current/
COLAMDVERSION = COLAMD-2.7.3
COLAMDPREFIX ?= $(PREFIX)
COLAMDURL = http://www.cise.ufl.edu/research/sparse/colamd/current/
CHOLMODVERSION = CHOLMOD-1.7.2
#CHOLMODVERSION = CHOLMOD-1.7.3
CHOLMODPREFIX ?= $(PREFIX)
CHOLMODURL = http://www.cise.ufl.edu/research/sparse/cholmod/current/
UFCONFIGVERSION = UFconfig-3.6.0
UFCONFIGURL = http://www.cise.ufl.edu/research/sparse/UFconfig/
AMDVERSION = AMD-2.2.2
AMDURL = http://www.cise.ufl.edu/research/sparse/amd/current/
MATPLOTLIBVERSION = matplotlib-1.0.1
MATPLOTLIBURL = http://sourceforge.net/projects/matplotlib/files/matplotlib/
WXPYTHONTOOLKIT_no = --without-gtk --disable-unicode --disable-gtktest --with-x11
WXPYTHONTOOLKIT_yes = --with-gtk --enable-unicode
WXPYTHONVERSION = 2.8.11.0
WXFLAGS = --with-opengl --enable-graphics_ctx --enable-shared --disable-compat24 --enable-compat26 --disable-sound --enable-monolithic --with-libpng --with-libjpeg --with-libtiff --with-zlib
WXPYTHONPREFIX ?= $(PREFIX)
WXPYTHONURL = http://www.wxpython.org/download.php#sources
PYOPENGLVERSION = PyOpenGL-3.0.1
PYOPENGLPREFIX ?= $(PREFIX)
PYOPENGLURL = http://pyopengl.sourceforge.net/documentation/installation.html
PYOPENGLACCELVERSION = accelerate-3.0.1
PYOPENGLACCELPREFIX ?= $(PREFIX)
PYOPENGLACCELURL = http://pyopengl.sourceforge.net/documentation/installation.html
QTVERSION = qt-everywhere-opensource-src-4.7.1
QTPREFIX ?= $(PREFIX)
QTFLAGS = -opengl -nomake examples -nomake demos -nomake translations -optimized-qmake -no-nas-sound -no-javascript-jit -opensource -no-qt3support -no-audio-backend -system-zlib -system-libtiff -system-libpng -system-libjpeg
SIPVERSION = sip-4.12.1
SIPPREFIX ?= $(PREFIX)
SIPURL = http://www.riverbankcomputing.co.uk/software/sip/download
PYQTVERSION = PyQt-x11-gpl-4.8.3
PYQTPREFIX ?= $(PREFIX)
PYQTURL = http://www.riverbankcomputing.co.uk/software/pyqt/download
JPEGVERSION = 8b
JPEGPREFIX ?= $(PREFIX)
ZLIBVERSION = zlib-1.2.5
ZLIBPREFIX ?= $(PREFIX)
PNGVERSION = libpng-1.4.5
PNGPREFIX ?= $(PREFIX)
PNGURL = http://www.libpng.org/pub/png/libpng.html
TIFFVERSION = tiff-3.9.4
TIFFPREFIX ?= $(PREFIX)
BOOSTVERSION = boost_1_45_0
BOOSTPREFIX ?= $(PREFIX)
# optional packages:
#GTKVERSION = gtk+-2.22.0
GTKVERSION = gtk+-2.22.1
GTKPREFIX = $(PREFIX)
#GLIBVERSION = glib-2.26.0
GLIBVERSION = glib-2.26.1
GLIBPREFIX = $(PREFIX)
#PANGOVERSION = pango-1.28.1
PANGOVERSION = pango-1.28.3
PANGOPREFIX = $(PREFIX)
#PIXMANVERSION = pixman-0.19.2
PIXMANVERSION = pixman-0.20.2
PIXMANPREFIX = $(PREFIX)
#GDKPIXBUFVERSION = gdk-pixbuf-2.21.5
GDKPIXBUFVERSION = gdk-pixbuf-2.22.1
GDKPIXBUFPREFIX = $(PREFIX)
ATKVERSION = atk-1.32.0
ATKPREFIX = $(PREFIX)
#CAIROVERSION = cairo-1.10.0
CAIROVERSION = cairo-1.10.2
CAIROPREFIX = $(PREFIX)
FONTCFGVERSION = fontconfig-2.8.0
FONTCFGPREFIX = $(PREFIX)
GETTEXTPREFIX = $(PREFIX)
GETTEXTVERSION = gettext-0.18.1.1
default: all
all: precheck cellprofiler
gtk: precheck libgtk
#
# Here we have all the tests for prerequisites of this Makefile
# Add as many (useful) tests as you like, the more the better.
# They just need to perform quickly!
# NOTE: Some of these prechecks where kindly provided by
# the XuvTools project at http://xuvtools.org/
#
precheck-java: $(SRCDIR)/findlibjvm.class
@if test "$(DISABLE_PRECHECKS)" != "YES" ; then \
if test -z "$(JAVA_HOME)" ; then \
echo "Could not detect JAVA_HOME variable. Please export JAVA_HOME from" ; \
echo "your SHELL to the path of the JRE, and add it to LD_LIBRARY_PATH." ; \
false ; \
elif ! echo "$(LD_LIBRARY_PATH)"|grep -qs "$(JAVA_HOME)" ; then \
echo "It seems JAVA_HOME is missing from the LD_LIBRARY_PATH variable." ; \
echo "Please read the setup guide on how to fix that." ; \
false ; \
else \
cd "$(SRCDIR)" && \
LIBJVMPATH=$$(java findlibjvm 2>/dev/zero) && \
if ! test -r "$${LIBJVMPATH}/libjvm.so" ; then \
echo "Could not find 'libjvm.so' in the following path:" ; \
echo " '$${LIBJVMPATH}'" ; \
echo "Please read the setup guide on how to fix that." ; \
false ; \
fi ; \
fi ; \
fi
precheck-env:
@if test "$(DISABLE_PRECHECKS)" != "YES" ; then \
if test -z "$(HOSTTYPE)" ; then \
echo "Could not detect HOSTTYPE variable. Please export HOSTTYPE from" ; \
echo "your SHELL to set the default architecture of the build." ; \
false ; \
elif test -n "$(CPPFLAGS)" -o -n "$(LDFLAGS)" ; then \
echo "The CPPFLAGS and/or LDFLAGS variables are set. Likely, numpy" ; \
echo "will not compile because external flags override theirs." ; \
echo "Please unset these variables unless you know what you are doing." ; \
false ; \
fi ; \
fi
precheck-git:
@if ! git --version 2>&1|grep -iqs '^git.*version [1-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect GIT revision management system, please compile" ; \
echo "or install git for your platform. Alternatively, you can disable" ; \
echo "ilastik (it is optional), or download and compile it manually." ; \
false ; \
fi
precheck-svn:
@if ! svn --version 2>&1|grep -iqs '^svn.*version [1-9][0-9]*\.[0-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent version of Subversion (>= 1.4.0)," ; \
echo "please compile or install Subversion/SVN." ; \
echo "You can also try to install SVN for your Linux distribution." ; \
false ; \
fi
precheck-wget:
@if ! wget --help 2>&1|grep -qs -- '--no-check-certificate' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Your wget does not support the '--no-check-certificate' attribute." ; \
echo "You need a newer wget, or you need to disable the use of the" ; \
echo "attribute '--no-check-certificate' in this Makefile. To do that," ; \
echo "try to add to the command-line WGETFLAGS=\"\"." ; \
false ; \
fi
precheck-cmake:
@if ! cmake --version 2>/dev/zero|grep -iqs '^cmake.* 2\.[8-9]\|^cmake.* [3-9]\.' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent cmake build system (>=2.8.0)," ; \
echo "it is unlikely that ilastik will compile! Please install cmake" ; \
echo "separately, or remove ilastik from the default build." ; \
false ; \
fi
precheck-gcc:
@if ! gcc --version 2>/dev/zero|grep -iqs '^gcc.* [4-9]\.[2-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent GCC C compiler version (>=4.2.0)," ; \
echo "it is very unlikely that you will be able to compile fast code!" ; \
false ; \
fi
precheck-gpp:
@if ! g++ --version 2>/dev/zero|grep -iqs '^g++.* [4-9]\.[2-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent GCC C++ compiler version (>=4.2.0)," ; \
echo "it is very unlikely that you will be able to compile fast code!" ; \
false ; \
fi
precheck-gfortran:
@if ! gfortran --version 2>/dev/zero|grep -iqs '^GNU Fortran.* [4-9]\.[2-9][0-9]*\.[0-9][0-9]*' && test "$(DISABLE_PRECHECKS)" != "YES" ; then \
echo "Could not detect a recent GCC Fortran 95 compiler version (>=4.2.0)," ; \
echo "it is very unlikely that you will be able to compile fast code!" ; \
false ; \
fi
precheck-success:
@echo "All pre-checks executed successfully."
precheck: precheck-java precheck-env precheck-svn precheck-git precheck-gcc precheck-gpp precheck-gfortran precheck-wget precheck-cmake precheck-success
.PHONY: precheck-java precheck-env precheck-svn precheck-git precheck-gcc precheck-gpp precheck-gfortran precheck-wget precheck-cmake precheck-success precheck clean update
#
# Here come the actual compile instructions for CP2 prerequisites,
# package by package. There is no strict ordering, but it was coded
# top-to-bottom, so you may assume that later specified packages
# depend on earlier specified packages.
#
python: $(PYTHONPREFIX)/bin/python
$(PYTHONPREFIX)/bin/python: $(SRCDIR)/$(PYTHONVERSION).tar.bz2 $(SQLITEPREFIX)/lib/libsqlite3.la $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYTHONVERSION)" && \
tar -xjf "$(SRCDIR)/$(PYTHONVERSION).tar.bz2" && \
cd "$(PYTHONVERSION)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export C_INCLUDE_PATH="$(PYTHONPREFIX)/include:$(C_INCLUDE_PATH)" && \
./configure \
--prefix="$(PYTHONPREFIX)" \
--enable-shared && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
cython: $(CYTHONPREFIX)/bin/cython
$(CYTHONPREFIX)/bin/cython: $(SRCDIR)/$(CYTHONVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(PYPIPREFIX)/bin/easy_install
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(CYTHONVERSION)" && \
tar -xzf "$(SRCDIR)/$(CYTHONVERSION).tar.gz" && \
cd "$(CYTHONVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py install
lapack: $(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a
$(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a: $(SRCDIR)/$(LAPACKVERSION).tgz
cpufreq-selector -g performance || true && \
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(LAPACKVERSION)" && \
tar -zxf "$(SRCDIR)/$(LAPACKVERSION).tgz" && \
cd "$(LAPACKVERSION)" && \
cp ./INSTALL/make.inc.gfortran ./make.inc && \
perl -pi -e 's/(^OPTS.*)/$$1 $(LAPACKFLAGS)/g' ./make.inc && \
perl -pi -e 's/(^NOOPT.*)/$$1 $(LAPACKFLAGS)/g' ./make.inc && \
perl -pi -e 's/(^FORTRAN.*?)=.*/$$1= gfortran $(LAPACKFLAGS)/g' ./make.inc && \
perl -pi -e 's/(^LOADER.*?)=.*/$$1= gfortran/g' ./make.inc && \
cd "./SRC/" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(MAKE) $(MAKE_FLAGS)
atlas: $(ATLASPREFIX)/lib/libatlas.a
$(ATLASPREFIX)/lib/libatlas.a: $(SRCDIR)/$(ATLASVERSION).tar.bz2 $(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a
cpufreq-selector -g performance ; \
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "./ATLAS" && \
tar -jxf "$(SRCDIR)/$(ATLASVERSION).tar.bz2" && \
cd "./ATLAS/" && \
mkdir -p "./$(HOSTTYPE)" && \
cd "./$(HOSTTYPE)/" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
../configure \
-Fa alg -fPIC -b 64 \
-Ss flapack "$(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a" \
-Ss pmake "make -j4" -Si cputhrchk 0 \
--prefix="$(ATLASPREFIX)" && \
$(MAKE) && \
mkdir tmp && \
cd tmp && \
ar x ../lib/liblapack.a && \
mv ../lib/liblapack.a ../lib/liblapack_ATLAS.a && \
cp "$(TMPDIR)/$(LAPACKVERSION)/lapack_LINUX.a" ../lib/liblapack.a && \
ar r ../lib/liblapack.a *.o && \
cd ../ && \
$(MAKE) check && \
$(MAKE) install
umfpack: $(UMFPACKPREFIX)/lib/libumfpack.a
$(UMFPACKPREFIX)/lib/libumfpack.a: $(SRCDIR)/$(UMFPACKVERSION).tar.gz $(SRCDIR)/$(CAMDVERSION).tar.gz $(SRCDIR)/$(CCOLAMDVERSION).tar.gz $(SRCDIR)/$(COLAMDVERSION).tar.gz $(SRCDIR)/$(CHOLMODVERSION).tar.gz $(SRCDIR)/$(UFCONFIGVERSION).tar.gz $(SRCDIR)/$(AMDVERSION).tar.gz $(ATLASPREFIX)/lib/libatlas.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "CHOLMOD" && \
rm -fr "COLAMD" && \
rm -fr "CCOLAMD" && \
rm -fr "CAMD" && \
rm -fr "UMFPACK" && \
rm -fr "UFconfig" && \
rm -fr "AMD" && \
tar -xzf "$(SRCDIR)/$(CHOLMODVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(COLAMDVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(CCOLAMDVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(CAMDVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(UMFPACKVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(UFCONFIGVERSION).tar.gz" && \
tar -xzf "$(SRCDIR)/$(AMDVERSION).tar.gz" && \
perl -pi -e 's@(^CHOLMOD_CONFIG )=.*@$$1= -DNPARTITION@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^CC )=.*@$$1= gcc@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^CFLAGS .*)@$$1 -m64 -fPIC@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^F77 )=.*@$$1= gfortran@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^F77FLAGS .*)@$$1 -m64 -fPIC@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^BLAS )=.*@$$1= -L$(ATLASPREFIX)/lib -llapack -lf77blas -lcblas -latlas -lgfortran@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^LAPACK )=.*@$$1= -L$(ATLASPREFIX)/lib -llapack -lf77blas -lcblas -latlas -lgfortran@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^METIS_PATH )=.*@$$1= @g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^METIS )=.*@$$1= @g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^INSTALL_LIB )=.*@$$1= $(UMFPACKPREFIX)/lib@g' UFconfig/UFconfig.mk && \
perl -pi -e 's@(^INSTALL_INCLUDE )=.*@$$1= $(UMFPACKPREFIX)/include@g' UFconfig/UFconfig.mk && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
cd "UMFPACK" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install && \
cp -p "../AMD/Include/amd.h" "$(UMFPACKPREFIX)/include/" && \
cp -p "../UFconfig/UFconfig.h" "$(UMFPACKPREFIX)/include/"
fftw: $(FFTWPREFIX)/lib/libfftw3.la $(FFTWPREFIX)/lib/libfftw3l.la $(FFTWPREFIX)/lib/libfftw3f.la
$(FFTWPREFIX)/lib/libfftw3.la: $(SRCDIR)/$(FFTWVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(FFTWVERSION)" && \
tar -xzf "$(SRCDIR)/$(FFTWVERSION).tar.gz" && \
cd "$(FFTWVERSION)" && \
./configure \
--enable-sse2 \
--enable-shared \
--prefix="$(FFTWPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
$(FFTWPREFIX)/lib/libfftw3l.la: $(SRCDIR)/$(FFTWVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(FFTWVERSION)" && \
tar -xzf "$(SRCDIR)/$(FFTWVERSION).tar.gz" && \
cd "$(FFTWVERSION)" && \
./configure \
--enable-long-double \
--enable-shared \
--prefix="$(FFTWPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
$(FFTWPREFIX)/lib/libfftw3f.la: $(SRCDIR)/$(FFTWVERSION).tar.gz $(FFTWPREFIX)/lib/libfftw3.la $(FFTWPREFIX)/lib/libfftw3l.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(FFTWVERSION)" && \
tar -xzf "$(SRCDIR)/$(FFTWVERSION).tar.gz" && \
cd "$(FFTWVERSION)" && \
./configure \
--enable-float \
--enable-sse \
--enable-shared \
--prefix="$(FFTWPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
numpy: $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info
$(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(NUMPYVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(UMFPACKPREFIX)/lib/libumfpack.a $(ATLASPREFIX)/lib/libatlas.a $(FFTWPREFIX)/lib/libfftw3f.la $(PYPIPREFIX)/bin/easy_install
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(NUMPYVERSION)" && \
tar -zxf "$(SRCDIR)/$(NUMPYVERSION).tar.gz" && \
cd "$(NUMPYVERSION)" && \
cp site.cfg.example site.cfg && \
perl -pi -e 's@#(\[DEFAULT\])@$$1@g' site.cfg && \
perl -pi -e 's@#(library_dirs.*)@$$1:$(PYTHONPREFIX)/lib@g' site.cfg && \
perl -pi -e 's@#(include_dirs.*)@$$1:$(PYTHONPREFIX)/include@g' site.cfg && \
perl -pi -e 's@#(\[lapack_opt\])@$$1@g' site.cfg && \
perl -pi -e 's@#(libraries = lapack, f77blas, cblas, atlas)@$$1, gfortran@g' site.cfg && \
perl -pi -e 's@#(\[amd\])@$$1@g' site.cfg && \
perl -pi -e 's@#(amd_libs)@$$1@g' site.cfg && \
perl -pi -e 's@#(\[umfpack\])@$$1@g' site.cfg && \
perl -pi -e 's@#(umfpack_libs)@$$1@g' site.cfg && \
perl -pi -e 's@#(\[fftw\])@$$1@g' site.cfg && \
perl -pi -e 's@#(libraries = fftw3)@$$1@g' site.cfg && \
perl -pi -e 's@#(\[djbfft\])@$$1@g' site.cfg && \
export MKL="None" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build --fcompiler=gfortran && \
$(PYTHONPREFIX)/bin/python setup.py install
pcre: $(PCREPREFIX)/bin/pcre-config
$(PCREPREFIX)/bin/pcre-config: $(SRCDIR)/$(PCREVERSION).tar.bz2
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PCREVERSION)" && \
tar -xjf "$(SRCDIR)/$(PCREVERSION).tar.bz2" && \
cd "$(PCREVERSION)" && \
./configure \
--prefix="$(PCREPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
swig: $(SWIGPREFIX)/bin/swig
$(SWIGPREFIX)/bin/swig: $(SRCDIR)/$(SWIGVERSION).tar.gz $(PCREPREFIX)/bin/pcre-config
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SWIGVERSION)" && \
tar -xzf "$(SRCDIR)/$(SWIGVERSION).tar.gz" && \
cd "$(SWIGVERSION)" && \
export PCRE_CONFIG="$(PCREPREFIX)/bin/pcre-config" && \
export LD_LIBRARY_PATH="$(PCREPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./configure \
--prefix="$(SWIGPREFIX)" \
--with-python="$(PYTHONPREFIX)/bin/python" \
--without-python3 && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
scipy: $(SCIPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(SCIPYVERSION)-py$(PYVERSION).egg-info
$(SCIPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(SCIPYVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(SCIPYVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(UMFPACKPREFIX)/lib/libumfpack.a $(ATLASPREFIX)/lib/libatlas.a $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(PYPIPREFIX)/bin/easy_install $(PYTHONPREFIX)/bin/swig
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SCIPYVERSION)" && \
tar -zxf "$(SRCDIR)/$(SCIPYVERSION).tar.gz" && \
cd "$(SCIPYVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build --fcompiler=gfortran && \
$(PYTHONPREFIX)/bin/python setup.py install
matplotlib: $(SITEPKGPREFIX)/$(MATPLOTLIBVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/$(MATPLOTLIBVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(MATPLOTLIBVERSION).tar.gz $(PNGPREFIX)/lib/libpng.la $(TIFFPREFIX)/lib/libtiff.la $(JPEGPREFIX)/lib/libjpeg.la $(PYTHONPREFIX)/bin/python $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(WXPYTHONPREFIX)/bin/pywxrc $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(MATPLOTLIBVERSION)" && \
tar -zxf "$(SRCDIR)/$(MATPLOTLIBVERSION).tar.gz" && \
cd "$(MATPLOTLIBVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export PKG_CONFIG_PATH="$(GLIBPREFIX)/lib/pkgconfig:$(PANGOPREFIX)/lib/pkgconfig:$${PKG_CONFIG_PATH}" && \
export CPPFLAGS="-I$(PNGPREFIX)/include -I$(JPEGPREFIX)/include -I$(TIFFPREFIX)/include -I$(ZLIBPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(PNGPREFIX)/lib -L$(JPEGPREFIX)/lib -L$(TIFFPREFIX)/lib -L$(ZLIBPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(PNGPREFIX)/lib:$(JPEGPREFIX)/lib:$(TIFFPREFIX)/lib:$(ZLIBPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
pypi: $(PYPIPREFIX)/bin/easy_install
$(PYPIPREFIX)/bin/easy_install: $(SRCDIR)/$(PYPIVERSION) $(PYTHONPREFIX)/bin/python
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
sh $(PYPIVERSION) --prefix="$(PYTHONPREFIX)"
decorator: $(SITEPKGPREFIX)/$(DECORATORVERSION)-py$(PYVERSION).egg
$(SITEPKGPREFIX)/$(DECORATORVERSION)-py$(PYVERSION).egg: $(SRCDIR)/$(DECORATORVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(PYPIPREFIX)/bin/easy_install
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(DECORATORVERSION)" && \
tar -xzf "$(SRCDIR)/$(DECORATORVERSION).tar.gz" && \
cd "$(DECORATORVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py install
ncurses: $(NCURSESPREFIX)/lib/libncursesw.a
$(NCURSESPREFIX)/lib/libncursesw.a: $(SRCDIR)/$(NCURSESVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(NCURSESVERSION)" && \
tar -xzf "$(SRCDIR)/$(NCURSESVERSION).tar.gz" && \
cd "$(NCURSESVERSION)" && \
./configure \
--prefix="$(NCURSESPREFIX)" \
--with-shared \
--without-ada \
--without-debug \
--enable-widec && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
sqlite: $(SQLITEPREFIX)/lib/libsqlite3.la
$(SQLITEPREFIX)/lib/libsqlite3.la: $(SRCDIR)/$(SQLITEVERSION).tar.gz $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SQLITEVERSION)" && \
tar -zxf "$(SRCDIR)/$(SQLITEVERSION).tar.gz" && \
cd "$(SQLITEVERSION)" && \
export CPPFLAGS="-I$(ZLIBPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(ZLIBPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(ZLIBPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./configure \
--prefix="$(SQLITEPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
pysqlite: $(PYSQLITEPREFIX)/lib/python$(PYVERSION)/site-packages/$(PYSQLITEVERSION)-py$(PYVERSION).egg-info
$(PYSQLITEPREFIX)/lib/python$(PYVERSION)/site-packages/$(PYSQLITEVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(PYSQLITEVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(SQLITEPREFIX)/lib/libsqlite3.la $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYSQLITEVERSION)" && \
tar -zxf "$(SRCDIR)/$(PYSQLITEVERSION).tar.gz" && \
cd "$(PYSQLITEVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export CPPFLAGS="-I$(SQLITEPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(SQLITEPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(SQLITEPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
mysql: $(PYTHONPREFIX)/lib/mysql/libmysqlclient.la
$(PYTHONPREFIX)/lib/mysql/libmysqlclient.la: $(SRCDIR)/$(MYSQLVERSION).tar.gz $(ZLIBPREFIX)/lib/libz.a $(NCURSESPREFIX)/lib/libncursesw.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(MYSQLVERSION)" && \
tar -zxf "$(SRCDIR)/$(MYSQLVERSION).tar.gz" && \
cd "$(MYSQLVERSION)" && \
export CPPFLAGS="-I$(NCURSESPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(NCURSESPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(NCURSESPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./configure \
--prefix="$(MYSQLPREFIX)" \
--with-zlib-dir="$(ZLIBPREFIX)" \
--disable-community-features \
--without-server \
--without-docs && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
mysqlpython: $(SITEPKGPREFIX)/MySQL_python-$(MYSQLPYTHONVERSION)-py$(PYVERSION)-linux-x86_64.egg
$(SITEPKGPREFIX)/MySQL_python-$(MYSQLPYTHONVERSION)-py$(PYVERSION)-linux-x86_64.egg: $(SRCDIR)/MySQL-python-$(MYSQLPYTHONVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(PYPIPREFIX)/bin/easy_install $(PYTHONPREFIX)/lib/mysql/libmysqlclient.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "MySQL-python-$(MYSQLPYTHONVERSION)" && \
tar -xzf "$(SRCDIR)/MySQL-python-$(MYSQLPYTHONVERSION).tar.gz" && \
cd "MySQL-python-$(MYSQLPYTHONVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
pyopengl: $(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(PYOPENGLVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(PYTHONPREFIX)/bin/pilfile.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYOPENGLVERSION)" && \
tar -zxf "$(SRCDIR)/$(PYOPENGLVERSION).tar.gz" && \
cd "$(PYOPENGLVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
pyopenglaccel: $(SITEPKGPREFIX)/PyOpenGL_$(PYOPENGLACCELVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/PyOpenGL_$(PYOPENGLACCELVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/PyOpenGL-$(PYOPENGLACCELVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(PYTHONPREFIX)/bin/pilfile.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "PyOpenGL-$(PYOPENGLACCELVERSION)" && \
tar -zxf "$(SRCDIR)/PyOpenGL-$(PYOPENGLACCELVERSION).tar.gz" && \
cd "PyOpenGL-$(PYOPENGLACCELVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
qt: qmake
qmake: $(QTPREFIX)/lib/libQtCore.la
$(QTPREFIX)/lib/libQtCore.la: $(SRCDIR)/$(QTVERSION).tar.gz $(PNGPREFIX)/lib/libpng.la $(JPEGPREFIX)/lib/libjpeg.la $(ZLIBPREFIX)/lib/libz.a $(TIFFPREFIX)/lib/libtiff.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(QTVERSION)" && \
tar -xzf "$(SRCDIR)/$(QTVERSION).tar.gz" && \
cd "$(QTVERSION)" && \
export LD_LIBRARY_PATH="$(PNGPREFIX)/lib:$(JPEGPREFIX)/lib:$(TIFFPREFIX)/lib:$(ZLIBPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
echo "yes"|./configure -prefix "$(QTPREFIX)" \
-I"$(PNGPREFIX)/include" -I"$(JPEGPREFIX)/include" -I"$(TIFFPREFIX)/include" -I"$(ZLIBPREFIX)/include" -I"$(SQLITEPREFIX)/include" \
-L"$(PNGPREFIX)/lib" -L"$(JPEGPREFIX)/lib" -L"$(TIFFPREFIX)/lib" -L"$(ZLIBPREFIX)/lib" -L"$(SQLITEPREFIX)/lib -lsqlite3" \
$(QTFLAGS) && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
pyqt: $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py
$(SITEPKGPREFIX)/PyQt4/pyqtconfig.py: $(SRCDIR)/$(PYQTVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(QTPREFIX)/lib/libQtCore.la $(SITEPKGPREFIX)/sip.so $(SITEPKGPREFIX)/PyOpenGL_$(PYOPENGLACCELVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/$(PYOPENGLVERSION)-py$(PYVERSION).egg-info
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYQTVERSION)" && \
tar -zxf "$(SRCDIR)/$(PYQTVERSION).tar.gz" && \
cd "$(PYQTVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python configure.py --confirm-license && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
sip: $(SITEPKGPREFIX)/sip.so
$(SITEPKGPREFIX)/sip.so: $(SRCDIR)/$(SIPVERSION).tar.gz $(PYTHONPREFIX)/bin/python
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(SIPVERSION)" && \
tar -zxf "$(SRCDIR)/$(SIPVERSION).tar.gz" && \
cd "$(SIPVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python configure.py && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
wxpython: $(WXPYTHONPREFIX)/bin/pywxrc
$(WXPYTHONPREFIX)/bin/pywxrc: $(SRCDIR)/wxPython-src-$(WXPYTHONVERSION).tar.bz2 $(PYTHONPREFIX)/bin/python $(PNGPREFIX)/lib/libpng.la $(JPEGPREFIX)/lib/libjpeg.la $(ZLIBPREFIX)/lib/libz.a $(TIFFPREFIX)/lib/libtiff.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "wxPython-src-$(WXPYTHONVERSION)" && \
tar -xjf "$(SRCDIR)/wxPython-src-$(WXPYTHONVERSION).tar.bz2" && \
rm -fr "wxPython-src-$(WXPYTHONVERSION)-$(HOSTTYPE)" && \
mkdir "wxPython-src-$(WXPYTHONVERSION)-$(HOSTTYPE)" && \
cd "wxPython-src-$(WXPYTHONVERSION)-$(HOSTTYPE)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
export CPPFLAGS="-I$(PNGPREFIX)/include -I$(JPEGPREFIX)/include -I$(TIFFPREFIX)/include -I$(ZLIBPREFIX)/include -I$(SQLITEPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(PNGPREFIX)/lib -L$(JPEGPREFIX)/lib -L$(TIFFPREFIX)/lib -L$(ZLIBPREFIX)/lib -L$(SQLITEPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(PNGPREFIX)/lib:$(JPEGPREFIX)/lib:$(TIFFPREFIX)/lib:$(ZLIBPREFIX)/lib:$(SQLITEPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
if test -f "$(GTKPREFIX)/lib/libgtk-x11-2.0.la" ; then \
export CPPFLAGS="-I$(GTKPREFIX)/include $${CPPFLAGS}" && \
export LDFLAGS="-L$(GTKPREFIX)/lib $${LDFLAGS}" && \
export LD_LIBRARY_PATH="$(GTKPREFIX)/lib:$${LD_LIBRARY_PATH}" ; \
fi && \
if test -d "$(GLIBPREFIX)/lib/pkgconfig" ; then \
export PKG_CONFIG_PATH="$(GLIBPREFIX)/lib/pkgconfig:$${PKG_CONFIG_PATH}" ; \
fi && \
"../wxPython-src-$(WXPYTHONVERSION)/configure" \
--prefix="$(WXPYTHONPREFIX)" \
$(WXPYTHONTOOLKIT_$(WXUSEGTK)) \
$(WXFLAGS) && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) $(MAKE_FLAGS) -C contrib/src/gizmos && \
$(MAKE) $(MAKE_FLAGS) -C contrib/src/stc && \
$(MAKE) -j1 install && \
$(MAKE) -j1 install -C contrib/src/gizmos && \
$(MAKE) -j1 install -C contrib/src/stc && \
cd "../wxPython-src-$(WXPYTHONVERSION)/wxPython/" && \
$(PYTHONPREFIX)/bin/python setup.py build_ext --inplace && \
$(PYTHONPREFIX)/bin/python setup.py install
nose: $(SITEPKGPREFIX)/$(PYTHONNOSEVERSION)-py$(PYVERSION).egg
$(SITEPKGPREFIX)/$(PYTHONNOSEVERSION)-py$(PYVERSION).egg: $(SRCDIR)/$(PYTHONNOSEVERSION).tar.gz $(PYTHONPREFIX)/bin/python
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PYTHONNOSEVERSION)" && \
tar -xzf "$(SRCDIR)/$(PYTHONNOSEVERSION).tar.gz" && \
cd "$(PYTHONNOSEVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py install
pil: $(PYTHONPREFIX)/bin/pilfile.py
$(PYTHONPREFIX)/bin/pilfile.py: $(SRCDIR)/$(PILVERSION).tar.gz $(PYTHONPREFIX)/bin/python $(JPEGPREFIX)/lib/libjpeg.la $(ZLIBPREFIX)/lib/libz.a $(TIFFPREFIX)/lib/libtiff.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PILVERSION)" && \
tar -xzf "$(SRCDIR)/$(PILVERSION).tar.gz" && \
cd "$(PILVERSION)" && \
perl -pi -e 's@(^JPEG_ROOT.*?)=.*@$$1= "$(JPEGPREFIX)"@g' setup.py && \
perl -pi -e 's@(^ZLIB_ROOT.*?)=.*@$$1= "$(ZLIBPREFIX)"@g' setup.py && \
perl -pi -e 's@(^TIFF_ROOT.*?)=.*@$$1= "$(TIFFPREFIX)"@g' setup.py && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build_ext -i && \
$(PYTHONPREFIX)/bin/python selftest.py && \
$(PYTHONPREFIX)/bin/python setup.py install
jpeg: $(JPEGPREFIX)/lib/libjpeg.la
$(JPEGPREFIX)/lib/libjpeg.la: $(SRCDIR)/jpegsrc.v$(JPEGVERSION).tar.gz
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "jpeg-$(JPEGVERSION)" && \
tar -xzf "$(SRCDIR)/jpegsrc.v$(JPEGVERSION).tar.gz" && \
cd "jpeg-$(JPEGVERSION)" && \
./configure \
CC="gcc" CPP="cpp" \
--prefix="$(JPEGPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
zlib: $(ZLIBPREFIX)/lib/libz.a
$(ZLIBPREFIX)/lib/libz.a: $(SRCDIR)/$(ZLIBVERSION).tar.bz2
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(ZLIBVERSION)" && \
tar -xjf "$(SRCDIR)/$(ZLIBVERSION).tar.bz2" && \
cd "$(ZLIBVERSION)" && \
./configure \
--prefix="$(ZLIBPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install && \
if ! test -r "$(ZLIBPREFIX)/include/zlib.h" ; then \
echo "error finding zlib.h" && \
exit 1 ; \
fi
png: $(PNGPREFIX)/lib/libpng.la
$(PNGPREFIX)/lib/libpng.la: $(SRCDIR)/$(PNGVERSION).tar.bz2
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(PNGVERSION)" && \
tar -xjf "$(SRCDIR)/$(PNGVERSION).tar.bz2" && \
cd "$(PNGVERSION)" && \
./configure \
--prefix="$(PNGPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
tiff: $(TIFFPREFIX)/lib/libtiff.la
$(TIFFPREFIX)/lib/libtiff.la: $(SRCDIR)/$(TIFFVERSION).tar.gz $(ZLIBPREFIX)/lib/libz.a $(JPEGPREFIX)/lib/libjpeg.la
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(TIFFVERSION)" && \
tar -xzf "$(SRCDIR)/$(TIFFVERSION).tar.gz" && \
cd "$(TIFFVERSION)" && \
./configure \
--prefix="$(TIFFPREFIX)" \
--enable-cxx \
--with-zlib-include-dir="$(ZLIBPREFIX)/include" \
--with-zlib-lib-dir="$(ZLIBPREFIX)/lib" \
--with-jpeg-include-dir="$(JPEGPREFIX)/include" \
--with-jpeg-lib-dir="$(JPEGPREFIX)/lib" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
hdf5: $(HDF5PREFIX)/lib/libhdf5.la
$(HDF5PREFIX)/lib/libhdf5.la: $(SRCDIR)/$(HDF5VERSION).tar.bz2 $(ZLIBPREFIX)/lib/libz.a
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(HDF5VERSION)" && \
tar -xjf "$(SRCDIR)/$(HDF5VERSION).tar.bz2" && \
cd "$(HDF5VERSION)" && \
./configure \
--prefix="$(HDF5PREFIX)" \
--with-pic \
--enable-hl \
--enable-cxx \
--enable-fortran \
--enable-production \
--with-zlib="$(ZLIBPREFIX)" && \
$(MAKE) $(MAKE_FLAGS) && \
$(MAKE) -j1 install
h5py: $(SITEPKGPREFIX)/$(H5PYVERSION)-py$(PYVERSION)-linux-x86_64.egg
$(SITEPKGPREFIX)/$(H5PYVERSION)-py$(PYVERSION)-linux-x86_64.egg: $(SRCDIR)/$(H5PYVERSION).tar.gz $(HDF5PREFIX)/lib/libhdf5.la $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(H5PYVERSION)" && \
tar -xzf "$(SRCDIR)/$(H5PYVERSION).tar.gz" && \
cd "$(H5PYVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build \
--hdf5="$(HDF5PREFIX)" && \
$(PYTHONPREFIX)/bin/python setup.py install
boost: $(BOOSTPREFIX)/lib/libboost_python.so
$(BOOSTPREFIX)/lib/libboost_python.so: $(SRCDIR)/$(BOOSTVERSION).tar.bz2 $(PYTHONPREFIX)/bin/python
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(BOOSTVERSION)" && \
tar -xjf "$(SRCDIR)/$(BOOSTVERSION).tar.bz2" && \
cd "$(BOOSTVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
./bootstrap.sh \
--prefix="$(BOOSTPREFIX)" \
--with-python-root="$(PYTHONPREFIX)" \
--with-libraries="python" && \
./bjam install
vigra: $(SITEPKGPREFIX)/vigra/vigranumpycore.so
$(SITEPKGPREFIX)/vigra/vigranumpycore.so: $(PYTHONPREFIX)/bin/python $(SRCDIR)/$(VIGRAVERSION)-src.tar.gz $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(FFTWPREFIX)/lib/libfftw3f.la $(HDF5PREFIX)/lib/libhdf5.la $(PNGPREFIX)/lib/libpng.la $(TIFFPREFIX)/lib/libtiff.la $(JPEGPREFIX)/lib/libjpeg.la $(BOOSTPREFIX)/lib/libboost_python.so
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(VIGRAVERSION)" && \
tar -zxf "$(SRCDIR)/$(VIGRAVERSION)-src.tar.gz" && \
cd "$(VIGRAVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
cmake \
-DCMAKE_INSTALL_PREFIX="$(VIGRAPREFIX)" \
-DPYTHON_EXECUTABLE="$(PYTHONPREFIX)/bin/python" \
-DPYTHON_LIBRARY="$(PYTHONPREFIX)/lib/libpython$(PYVERSION).so" \
-DCMAKE_PREFIX_PATH="$(PYTHONPREFIX)" \
-DDEPENDENCY_SEARCH_PREFIX="$(HDF5PREFIX);$(FFTWPREFIX);$(PNGPREFIX);$(TIFFPREFIX);$(JPEGPREFIX)" && \
$(MAKE) && \
$(MAKE) install
# $(MAKE) check && \
#
ilastik-v$(ILASTIKVERSION).tar.gz:
wget $(WGETFLAGS) --output-document="$@" "$(ILASTIKURL)"
ilastik: $(SITEPKGPREFIX)/ilastik-v$(ILASTIKMAJVERSION)-py$(PYVERSION).egg
$(SITEPKGPREFIX)/ilastik-$(ILASTIKMAJVERSION)-py$(PYVERSION).egg: ilastik-v$(ILASTIKVERSION).tar.gz $(SITEPKGPREFIX)/vigra/vigranumpycore.so $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py $(SITEPKGPREFIX)/$(QIMGTOARRVERSION)-py$(PYVERSION).egg-info
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "ilastik-v$(ILASTIKVERSION)" && \
tar -xzf "$(SRCDIR)/ilastik-v$(ILASTIKVERSION).tar.gz" && \
cd "$(TMPDIR)/ilastik-ilastik-0_5_05a" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
# git clone "git://gitorious.org/ilastik/ilastik.git" "ilastik-$(ILASTIKMAJVERSION)" && \
# cd "ilastik-$(ILASTIKMAJVERSION)" && \
# git checkout "v$(ILASTIKVERSION)" && \
# export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
# export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
# $(PYTHONPREFIX)/bin/python setup.py build && \
# $(PYTHONPREFIX)/bin/python setup.py install
qimgtoarr: $(SITEPKGPREFIX)/$(QIMGTOARRVERSION)-py$(PYVERSION).egg-info
$(SITEPKGPREFIX)/$(QIMGTOARRVERSION)-py$(PYVERSION).egg-info: $(SRCDIR)/$(QIMGTOARRVERSION).tar.gz $(NUMPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(NUMPYVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/PyQt4/pyqtconfig.py
mkdir -p "$(TMPDIR)" && cd "$(TMPDIR)" && \
rm -fr "$(QIMGTOARRVERSION)" && \
tar -xzf "$(SRCDIR)/$(QIMGTOARRVERSION).tar.gz" && \
cd "$(QIMGTOARRVERSION)" && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \
$(PYTHONPREFIX)/bin/python setup.py build && \
$(PYTHONPREFIX)/bin/python setup.py install
cp2: cellprofiler
cellprofiler: $(CELLPROFILERPREFIX)/CellProfiler/CellProfiler.py
$(CELLPROFILERPREFIX)/CellProfiler/CellProfiler.py: $(CYTHONPREFIX)/bin/cython $(WXPYTHONPREFIX)/bin/pywxrc $(SITEPKGPREFIX)/$(H5PYVERSION)-py$(PYVERSION)-linux-x86_64.egg $(SCIPYPREFIX)/lib/python$(PYVERSION)/site-packages/$(SCIPYVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/vigra/vigranumpycore.so $(SITEPKGPREFIX)/ilastik-$(ILASTIKMAJVERSION)-py$(PYVERSION).egg $(SITEPKGPREFIX)/$(MATPLOTLIBVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/$(DECORATORVERSION)-py$(PYVERSION).egg $(PYPIPREFIX)/bin/easy_install $(SITEPKGPREFIX)/MySQL_python-$(MYSQLPYTHONVERSION)-py$(PYVERSION)-linux-x86_64.egg $(PYSQLITEPREFIX)/lib/python$(PYVERSION)/site-packages/$(PYSQLITEVERSION)-py$(PYVERSION).egg-info $(SITEPKGPREFIX)/$(PYTHONNOSEVERSION)-py$(PYVERSION).egg $(PYTHONPREFIX)/bin/pilfile.py
mkdir -p "$(CELLPROFILERPREFIX)" && \
cd "$(CELLPROFILERPREFIX)" && \
if test -d "./CellProfiler" ; then \
cd ./CellProfiler && \
git clean -x -d . ; \
else \
rm -fr "./CellProfiler" && \
git clone "$(CELLPROFILER_CO_URL)" ./CellProfiler && \
cd ./CellProfiler ; \
fi && \
export PATH="$(PYTHONPREFIX)/bin:$(PATH)" && \
export LD_LIBRARY_PATH="$(PYTHONPREFIX)/lib:$${LD_LIBRARY_PATH}" && \