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An open-source application for biological image analysis
Community-contributed and experimental CellProfiler modules.
Open-source software for exploring and analyzing large, high-dimensional image-derived data.
CellProfiler tutorial pipelines and images
Example CellProfiler pipelines.
Run encapsulated docker containers with CellProfiler in the Amazon Web Services infrastructure.
Everything needed to build CellProfiler for your favorite environment.
An open source image processing library
Read and write life sciences file formats
Profiling modules from CellProfiler-Analyst for exploring and analyzing large, high-dimensional image-derived data. http://cellprofiler.org
CellProfiler’s Java dependencies
Jupyter notebooks for CellProfiler and friends
⚠️ ARCHIVED ⚠️ CellProfiler 1.0 (Matlab-based), current version at: CellProfiler/CellProfiler
A place to propose new features for CellProfiler
OLD cp website repo. Current repo is here: https://github.com/CellProfiler/cellprofiler.github.com. We are currently in the process of transferring any remaining and relevant issues to the current Github repo so that this repo can then be deleted.
ZMQ connection between CellProfiler and Knime
Infrastructure for continuous integration and automatic builds of CellProfiler internally at the Broad institute