Issues/4373 #4397
Merged
Issues/4373 #4397
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
added 15 commits
April 2, 2021 14:12
…clumping (doesn't work)
bethac07
reviewed
Jun 11, 2021
| @@ -83,6 +85,25 @@ | |||
| Higher values result in more regularly-shaped watershed basins. | |||
|
|
|||
| .. _compact watershed: http://scikit-image.org/docs/0.13.x/api/skimage.morphology.html#r395 | |||
|
|
|||
| Selecting *Advanced Settings* will split the detected objects into smaller objects based on a seeded watershed method | |||
There was a problem hiding this comment.
Could you add a line at the end here acknowledging that this code comes from the DeclumpObjects plugin by Madison Bowden?
There was a problem hiding this comment.
Oh yes, of course! I've since added attribution to Madison w/ my most recent commit.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
This PR closes issue #4373 - it incorporates optional advanced settings for the Watershed module to allow declumping using either a shape-based or an intensity-based method. Tests are included.