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@ChangLab

Chang Lab

Our team invents new technologies to study the role of the noncoding genome in diseases.

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  1. FAST-iCLIP FAST-iCLIP Public

    Forked from lmart999/FASTCLIP

    Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

    Jupyter Notebook 21 15

  2. ATACPrimerTool ATACPrimerTool Public

    Primer design for ATAC-qPCR

    Python 12 7

  3. ATAC_mito_sc ATAC_mito_sc Public

    single cell ATACseq pipeline

    Shell 8 14

  4. EMBLEM EMBLEM Public

    Perl 3 1

  5. ecDNA-hub-code-2021 ecDNA-hub-code-2021 Public

    Code for Hung*, Yost*, Xie*, et al. ecDNA hubs drive cooperative intermolecular oncogene expression (2021).

    R 3

  6. TCGA_PEPATAC TCGA_PEPATAC Public

    A repository containing the PEP files used for analyzing the TCGA bulk ATAC-seq data

    2

Repositories

Showing 8 of 8 repositories
  • royal-terminal Public

    One app to bring all your connections and bind them.

    ChangLab/royal-terminal’s past year of commit activity
    0 1 0 0 Updated Jun 25, 2022
  • ATACPrimerTool Public

    Primer design for ATAC-qPCR

    ChangLab/ATACPrimerTool’s past year of commit activity
    Python 12 7 3 0 Updated Jan 11, 2022
  • ecDNA-hub-code-2021 Public

    Code for Hung*, Yost*, Xie*, et al. ecDNA hubs drive cooperative intermolecular oncogene expression (2021).

    ChangLab/ecDNA-hub-code-2021’s past year of commit activity
    R 3 0 0 0 Updated Nov 22, 2021
  • TCGA_PEPATAC Public

    A repository containing the PEP files used for analyzing the TCGA bulk ATAC-seq data

    ChangLab/TCGA_PEPATAC’s past year of commit activity
    2 MIT 0 0 0 Updated Nov 4, 2021
  • ATAC_mito_sc Public

    single cell ATACseq pipeline

    ChangLab/ATAC_mito_sc’s past year of commit activity
    Shell 8 GPL-3.0 14 3 1 Updated Jul 10, 2021
  • EMBLEM Public
    ChangLab/EMBLEM’s past year of commit activity
    Perl 3 1 0 0 Updated Dec 7, 2018
  • pypiper Public Forked from databio/pypiper

    Python toolkit for building restartable pipelines

    ChangLab/pypiper’s past year of commit activity
    Python 0 9 0 0 Updated Dec 13, 2017
  • FAST-iCLIP Public Forked from lmart999/FASTCLIP

    Fully Automated and Standardized (FAST) iCLIP analysis pipeline.

    ChangLab/FAST-iCLIP’s past year of commit activity
    Jupyter Notebook 21 GPL-2.0 18 20 0 Updated Oct 7, 2017

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