TCGA_PEPATAC

This repository contains the sample metadata as a Portable Encapsulated Project (PEP) used for analyzing the TCGA bulk ATAC-seq data.

Use sample metadata in Python:

import peppy
prj = peppy.Project("PEP_2/TCGA_AllSamples_FinalBamList_config.yaml")

Then you can access metadata with the peppy API, such as:

prj.samples
prj.sample_table

Use sample metadata in R

library("pepr")
prj = pepr::Project("PEP_2/TCGA_AllSamples_FinalBamList_config.yaml")
sampleTable(prj)