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Mixed partition data and reading error #10

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TreeT2 opened this issue Oct 20, 2016 · 1 comment
Closed

Mixed partition data and reading error #10

TreeT2 opened this issue Oct 20, 2016 · 1 comment

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@TreeT2
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TreeT2 commented Oct 20, 2016

Hi All,

Im currently trying to construct a tree with data from two files. I have run the files individually with no issue. My partition file is as follows:

begin sets;
charset part1 = file.aln: *;
charset part2 = file2.fa: *;
charpartition mine = model:part1, model:part2;
end;

The command is
iqtree -spp test.nex

I then get the following error:
Reading partition model file test.nex ...

Reading partition part1 (model=model, aln=file.aln, seq=DNA, pos= *) ...
Reading alignment file file.aln ... ERROR: Cannot read file file.aln

I have used this file in a single data analysis (not partitioned) with no issue so I dont know what this is happening.

Thanks

@TreeT2
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TreeT2 commented Oct 20, 2016

Sorry silly error on my part

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