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Polymorphism-aware models #6

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bqminh opened this issue Sep 8, 2016 · 0 comments
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Polymorphism-aware models #6

bqminh opened this issue Sep 8, 2016 · 0 comments
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@dschrempf
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enhancement
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v1.6.0

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@bqminh
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bqminh commented Sep 8, 2016

Polymorphism-aware models allow to infer species tree in the presence of incomplete lineage sorting (http://www.iqtree.org/doc/Polymorphism-Aware-Models/). Right now it is in the PoMo branch of the git repository, and will be merged into the master code in a near future version 1.5.X.

TODOs (as of Sept 8, 2016):

  • Thorough testing, such that the code does not break down other options.
  • More user-friendly, eps. with the input count files.
  • Integration of Gamma rate heterogeneity and other models.
  • Integration of the non-reversible PoMo models.
@bqminh bqminh added this to the v1.5.X milestone Sep 8, 2016
@bqminh bqminh mentioned this issue Jun 2, 2017
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@bqminh bqminh modified the milestones: v1.5.X, v1.6.0 Dec 6, 2017
@bqminh bqminh closed this as completed Dec 6, 2017
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