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High-order advection stencils, overhaul of boundary treatment, and bugfix in advection reconstruction #2603

Merged
merged 183 commits into from
Jul 25, 2022
Merged

High-order advection stencils, overhaul of boundary treatment, and bugfix in advection reconstruction #2603

merged 183 commits into from
Jul 25, 2022

Commits on Jun 8, 2022

  1. added test

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    simone-silvestri committed Jun 8, 2022
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Commits on Jun 13, 2022

  1. introducing weno 3 for boundaries

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  2. export WENO3

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    simone-silvestri committed Jun 13, 2022
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  3. testing WENO3

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  4. child advection schemes

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    simone-silvestri committed Jun 13, 2022
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  5. fixing boundary fluxes

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    simone-silvestri committed Jun 13, 2022
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  6. fixing boundary fluxes

    @simone-silvestri
    simone-silvestri committed Jun 13, 2022
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  7. fixed topologically conditional interpolation

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  8. ready to test

    @simone-silvestri
    simone-silvestri committed Jun 13, 2022
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  9. fallback for low order

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  10. correct weno order coefficients

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    simone-silvestri committed Jun 13, 2022
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  11. upwind for vector_invariant downgrading

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  12. small bugfix in stretched weno construction

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    simone-silvestri committed Jun 13, 2022
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  13. taking care of stretched smoothness

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  14. some details

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  15. allow both stencils

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  16. my commits

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  17. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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  18. weno3 need 2 boundary points

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  19. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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Commits on Jun 14, 2022

  1. finally correct boundary treatment

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  2. changed name

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  3. renaming

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  4. fixed horizontal boundaries

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  5. final touches

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  6. correct manifest

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  7. fixed real boundaries stencils

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  8. Merge remote-tracking branch 'origin/main' into ss/advection_refactor

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  9. changed real boundaries fluxes

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Commits on Jun 15, 2022

  1. new changes

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  2. operators where not specified

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  3. fixed conditional derivatives

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  4. adding test

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  5. merged

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  6. reverted manifest and project

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  7. bugfix in immersed cell

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  8. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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Commits on Jun 16, 2022

  1. weno nth order

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    simone-silvestri committed Jun 16, 2022
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  2. adding WENO n

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    simone-silvestri committed Jun 16, 2022
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Commits on Jun 17, 2022

  1. weno-n works

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    simone-silvestri committed Jun 17, 2022
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  2. removing old wenos

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    simone-silvestri committed Jun 17, 2022
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  3. removed weno5

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  4. no more vorticity on the boundary

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  5. small bugfix

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    simone-silvestri committed Jun 17, 2022
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  6. another bugfix

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  7. another bugfix

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    simone-silvestri committed Jun 17, 2022
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  8. small beautification

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Commits on Jun 20, 2022

  1. fixed stretched coefficients'

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  2. reverted tomls

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  3. another solution for the Face problem

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  4. some updates...

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Commits on Jun 21, 2022

  1. Update src/Advection/weno_nth_order.jl 

    Co-authored-by: Navid C. Constantinou <navidcy@users.noreply.github.com>
    @simone-silvestri @navidcy
    simone-silvestri and navidcy committed Jun 21, 2022
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  2. a whole lot of change

    @simone-silvestri
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  3. a whole lot of change

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  4. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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  5. hotfix

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  6. hotfix

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  7. last for now

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  8. disambiguation

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  9. small test

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  10. small test

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  11. hotfix

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  12. hotfix

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  13. some info

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  14. fixed all tests?

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  15. another large change

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  16. removed insanely long test

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  17. removed insanely long test

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  18. added advection test

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  19. fixed new tests

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  20. fixed new tests

    @simone-silvestri
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  21. fixed new tests

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  22. fixed new tests

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  23. fixed new tests

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  24. removed temporary file

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Commits on Jun 22, 2022

  1. improved aliases

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  2. centered till 12th and upwind will 11th order

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  3. small fix

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  4. add WENO docstring

    @navidcy
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  5. bump minor version

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  6. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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  7. changed new test

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  8. small mistake

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  9. add docstring for calc_reconstruction_stencil

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  10. delete extra spaces in show methods

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  11. add doctest for stretched z-grid

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  12. Update src/Advection/reconstruction_coefficients.jl 

    Co-authored-by: Navid C. Constantinou <navidcy@users.noreply.github.com>
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Commits on Jun 23, 2022

  1. small changes

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  2. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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Commits on Jun 24, 2022

  1. add multi dimensional advection

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  2. multidimensional vector invariant

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Commits on Jun 26, 2022

  1. Merge branch 'main' into ss/advection_refactor

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Commits on Jun 27, 2022

  1. updates

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  2. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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Commits on Jun 28, 2022

  1. bugfix

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  2. it does have a definition

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Commits on Jun 29, 2022

  1. reversing the stencil

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  2. new changes

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  3. new changes

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  4. correct stencil

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  5. bugfix

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  6. capping the centered scheme

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  7. finally correct smoothness?

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  8. small changes

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Commits on Jun 30, 2022

  1. fixed test

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  2. stretched to inner

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  3. the right combination

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    simone-silvestri committed Jun 30, 2022
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  4. whooops

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    simone-silvestri committed Jun 30, 2022
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  5. cleaning up a bit

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    simone-silvestri committed Jun 30, 2022
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  6. fix immersed boundary bug

    @simone-silvestri
    simone-silvestri committed Jun 30, 2022
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  7. bugfix

    @simone-silvestri
    simone-silvestri committed Jun 30, 2022
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  8. added 2D convergence test

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    simone-silvestri committed Jun 30, 2022
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  9. adapting swh

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    simone-silvestri committed Jun 30, 2022
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  10. slighly more elegant

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    simone-silvestri committed Jun 30, 2022
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  11. disambiguation

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    simone-silvestri committed Jun 30, 2022
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Commits on Jul 1, 2022

  1. small changes

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    simone-silvestri committed Jul 1, 2022
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  2. bugfixes...

    @simone-silvestri
    simone-silvestri committed Jul 1, 2022
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  3. testing multidimensional reconstruction

    @simone-silvestri
    simone-silvestri committed Jul 1, 2022
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  4. bugfix

    @simone-silvestri
    simone-silvestri committed Jul 1, 2022
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  5. introducing non linear tests

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    simone-silvestri committed Jul 1, 2022
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Commits on Jul 5, 2022

  1. ready to split the PRs

    @simone-silvestri
    simone-silvestri committed Jul 5, 2022
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  2. cleaned multidimensional

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    simone-silvestri committed Jul 5, 2022
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  3. cleaned vector invariant

    @simone-silvestri
    simone-silvestri committed Jul 5, 2022
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  4. reverted manifest and project

    @simone-silvestri
    simone-silvestri committed Jul 5, 2022
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  5. cleaned advection

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    simone-silvestri committed Jul 5, 2022
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  6. a little more cleaning

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    simone-silvestri committed Jul 5, 2022
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  7. modified shallow water near global

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  8. changed bathymetry

    @simone-silvestri
    simone-silvestri committed Jul 5, 2022
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  9. small changes

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    simone-silvestri committed Jul 5, 2022
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  10. @inbounds + some comments

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Commits on Jul 6, 2022

  1. merge main

    @tomchor
    tomchor committed Jul 6, 2022
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  2. small bugfix

    @simone-silvestri
    simone-silvestri committed Jul 6, 2022
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  3. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
    @simone-silvestri
    simone-silvestri committed Jul 6, 2022
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  4. bugfix for partialcell

    @simone-silvestri
    simone-silvestri committed Jul 6, 2022
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  5. fixed docs?

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    simone-silvestri committed Jul 6, 2022
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  6. now fixed docs?

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    simone-silvestri committed Jul 6, 2022
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Commits on Jul 7, 2022

  1. cleared all tests

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    simone-silvestri committed Jul 7, 2022
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  2. bump version

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    simone-silvestri committed Jul 7, 2022
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  3. revamp of 2.8 degree simulation

    @simone-silvestri
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  4. added derivative for constants (constant_salinity)

    @simone-silvestri
    simone-silvestri committed Jul 7, 2022
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  5. Update src/Advection/upwind_biased_reconstruction.jl 

    Co-authored-by: Tomas Chor <tomaschor@gmail.com>
    @simone-silvestri @tomchor
    simone-silvestri and tomchor committed Jul 7, 2022
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  6. Update src/Advection/weno_reconstruction.jl 

    Co-authored-by: Tomas Chor <tomaschor@gmail.com>
    @simone-silvestri @tomchor
    simone-silvestri and tomchor committed Jul 7, 2022
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  7. Update src/Models/ShallowWaterModels/shallow_water_model.jl 

    Co-authored-by: Tomas Chor <tomaschor@gmail.com>
    @simone-silvestri @tomchor
    simone-silvestri and tomchor committed Jul 7, 2022
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  8. Update src/Models/ShallowWaterModels/shallow_water_model.jl 

    Co-authored-by: Tomas Chor <tomaschor@gmail.com>
    @simone-silvestri @tomchor
    simone-silvestri and tomchor committed Jul 7, 2022
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  9. back to shallow

    @simone-silvestri
    simone-silvestri committed Jul 7, 2022
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  10. documented the skipping

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  11. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
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Commits on Jul 12, 2022

  1. merged main

    @simone-silvestri
    simone-silvestri committed Jul 12, 2022
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Commits on Jul 13, 2022

  1. Merge branch 'main' into ss/advection_refactor

    @navidcy
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  2. merge main

    @navidcy
    navidcy committed Jul 13, 2022
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  3. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
    @navidcy
    navidcy committed Jul 13, 2022
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  4. changes

    @simone-silvestri
    simone-silvestri committed Jul 13, 2022
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  5. Update src/Advection/weno_reconstruction.jl 

    Co-authored-by: Navid C. Constantinou <navidcy@users.noreply.github.com>
    @simone-silvestri @navidcy
    simone-silvestri and navidcy committed Jul 13, 2022
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  6. Update src/Advection/weno_reconstruction.jl 

    Co-authored-by: Navid C. Constantinou <navidcy@users.noreply.github.com>
    @simone-silvestri @navidcy
    simone-silvestri and navidcy committed Jul 13, 2022
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Commits on Jul 15, 2022

  1. new fixes

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  2. Merge branch 'ss/advection_refactor' of github.com:CliMA/Oceananigans… 

    ….jl into ss/advection_refactor
    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  3. other fixes...

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  4. fixes

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  5. fixed tests

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  6. @inbounds on coeff retrieval

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    simone-silvestri committed Jul 15, 2022
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  7. merged main

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  8. reverted manifest and project

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  9. more check inbounds

    @simone-silvestri
    simone-silvestri committed Jul 15, 2022
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  10. still not inbounding?

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    simone-silvestri committed Jul 15, 2022
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Commits on Jul 16, 2022

  1. giving up inbounding?

    @simone-silvestri
    simone-silvestri committed Jul 16, 2022
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  2. revert back

    @simone-silvestri
    simone-silvestri committed Jul 16, 2022
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Commits on Jul 19, 2022

  1. manifest-project temporary update

    @simone-silvestri
    simone-silvestri committed Jul 19, 2022
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Commits on Jul 20, 2022

  1. reverted manifest and project

    @simone-silvestri
    simone-silvestri committed Jul 20, 2022
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  2. whoops some tests were off

    @simone-silvestri
    simone-silvestri committed Jul 20, 2022
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Commits on Jul 21, 2022

  1. correct the halos in test

    @simone-silvestri
    simone-silvestri committed Jul 21, 2022
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  2. merged main

    @simone-silvestri
    simone-silvestri committed Jul 21, 2022
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  3. small mistake

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    simone-silvestri committed Jul 21, 2022
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  4. correct halos

    @simone-silvestri
    simone-silvestri committed Jul 21, 2022
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Commits on Jul 22, 2022

  1. Merge remote-tracking branch 'origin/main' into ss/advection_refactor

    @simone-silvestri
    simone-silvestri committed Jul 22, 2022
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  2. small bugfix

    @simone-silvestri
    simone-silvestri committed Jul 22, 2022
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  3. larger halos for immersedboundary (and VI weno)

    @simone-silvestri
    simone-silvestri committed Jul 22, 2022
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  4. fixed tests

    @simone-silvestri
    simone-silvestri committed Jul 22, 2022
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Commits on Jul 25, 2022

  1. Change formatting in weno_interpolants.jl

    @glwagner
    glwagner committed Jul 25, 2022
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  2. Consistent variable naming

    @glwagner
    glwagner committed Jul 25, 2022
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  3. Use non-short-circuiting logic in topologically_conditional_interpola… 

    …tion.jl
    @glwagner
    glwagner committed Jul 25, 2022
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  4. Improve comment in weno_interpolants

    @glwagner
    glwagner committed Jul 25, 2022
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  5. Update src/Advection/topologically_conditional_interpolation.jl 

    Co-authored-by: Gregory L. Wagner <wagner.greg@gmail.com>
    @simone-silvestri @glwagner
    simone-silvestri and glwagner committed Jul 25, 2022
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  6. name changes

    @simone-silvestri
    simone-silvestri committed Jul 25, 2022
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