SQANTI3 v5.2.2

Since the latest release, improvements in genic intron e7054ab intergenic and NIC isoform classification have been included a7c2680 Errors in the conda environment generation have been solved and monoexons that don't overlap an entire junction will be considered genic, not NIC. Only when the monoexon spans a whole intron will be considered NIC by intron retention 3275a7f. Also CAGE peak assignation has been improved 52def33.

SQANTI3 v5.2.1

Release Update
We're excited to announce this release, bringing crucial fixes and enhancements to improve your experience:

Bug Fixes:

• Resolved a fatal error in SQANTI3 report generation (Issue #278).
• Resolved the issue with the missing 'howtouse.png' image in the HTML report.

Enhancements:

• Simplified installation by removing the cDNA_Cupcake dependency, thanks to @diekhans (Issue #271).
• Fixed issues with reading STAR junction/coverage files in Squanti3 V 5.2 through update conda environment (Issue #260).
• Corrected an error in generating the Kallisto index through update conda environment (Issue #257).

These updates aim to streamline your workflow and enhance software reliability. We thank our community for their valuable input and support.

SQANTI3 v5.2

Update sqanti3_rescue.py version