structure of results.xml

[tarrow]

Just trying to get an idea of what should actually be in results.xml. Currently we turn out snippets like this:

Word Frequency

<?xml version="1.0" encoding="UTF-8"?>
<results title="frequencies">
 <result title="frequency" word="malaria" count="72"/>
</results>

Binomial Species

<?xml version="1.0" encoding="UTF-8"?>
<results title="binomial">
 <result pre=" species. In Madagascar, bimonthly treatment with the anthelmintic levamisole had no effect on " exact="Plasmodium falciparum" xpath="/html[1]/body[1]/div[2]/div[2]/div[3]/div[3]/p[1]" match="Plasmodium falciparum" post=" parasite density among children aged &amp;amp;lt;5 years but, among children aged ≥15 years, resulted " name="binomial"/>
</results>

[petermr]

All files should contain audit/log metadata. This could be something like:

<metadata
rundate="2016-04-29"
query="species binomial"
program="ami_0.3.1"
os="macosx.10.2"
... etc
inputSteam="..."
stemming="true"
caseSensitive="no"

On Fri, Apr 29, 2016 at 8:00 AM, tarrow notifications@github.com
wrote:Just trying to get an idea of what should actually be in results.xml.
my edits

Word Frequency

<metadata .../>

Binomial Species

<metadata
...
plugin="species" // maybe better word than species
option-"binomial"
parameters="expandAbbreviations"
dictionary="cmine.species"
dictionaryId="http://cmine...

<result pre=" species. In Madagascar, bimonthly treatment with the

anthelmintic levamisole had no effect on "

exact="Plasmodium falciparum" // the expanded string

xpath="/html[1]/body[1]/div[2]/div[2]/div[3]/div[3]/p[1]"

^^^ keep as this, not "local-name()"
maybe:

xpath="/html[1]/body[1]/div[2]/div[2]/div[3]/div[3]/p[1]/span[@Class='sentence'][3]

when we have sentences working

match="P. falciparum" // the surface match

wikidataId="225.2345" or whatever
dictionaryId="1234598" links to CMine dictionary

post=" parasite density among children aged &amp;lt;5 years but, among children aged ≥15 years, resulted "

name="binomial"/>

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#13

Peter Murray-Rust
Reader in Molecular Informatics
Unilever Centre, Dep. Of Chemistry
University of Cambridge
CB2 1EW, UK
+44-1223-763069