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32 Open 6 Closed
32 Open 6 Closed
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Issues list

how long it takes to calculate the DEGS by using DEG()
#38 opened Nov 28, 2022 by xinmiaoyan
question about classification of L-R database
#37 opened Oct 17, 2022 by jinyuanchun
italk plot
#36 opened May 3, 2022 by chenx9
Can only map two cell types when plotting DE genes
#35 opened Mar 8, 2022 by whitneyt1
issues when installing ITALK
#34 opened Nov 19, 2021 by xinmiaoyan
1
Can the new version of the tool add some down stream analysis function in this tool?
#33 opened Aug 17, 2021 by WangXiang50
class of the ligands
#32 opened Jul 26, 2021 by adesalegn
how to add enrichment information on circoplots
#30 opened Apr 22, 2021 by adesalegn
Error: Maybe your gap.degree is too large so that there is no space to allocate sectors.
#29 opened Apr 8, 2021 by rosanababu
Significant Alterations Over Time
#28 opened Mar 10, 2021 by Swilson6
1
could not find function "uh"
#27 opened Dec 22, 2020 by sailseem
1
About batch effects
#26 opened Dec 9, 2020 by LClungcancer
Error in [.Seurat(data, data$cell_type == i, ) : Incorrect number of logical values provided to subset features
#24 opened Nov 18, 2020 by EAC-T
2
link.arr.type='big.arrow' nothing shown
#22 opened Nov 5, 2020 by sailseem
error in DEG code
#20 opened Sep 6, 2020 by fzhang988
Potential error in FindLR for datatype = 'DEG' ?
#19 opened May 14, 2020 by dlmatera
14
Detailed tutorial
#18 opened May 10, 2020 by singcell
1
Error: order should contain names of all sectors. when running LRPlot with DEG datatype
#17 opened May 7, 2020 by whitneyt1
2
N/A in DEGs and converting Seurat DEG to dataframe for FindLR
#16 opened Apr 23, 2020 by Jennifer-Foltz
2
Found more than one class "DataFrame" in cache; using the first, from namespace 'PythonEmbedInR' Also defined by ‘S4Vectors’ Error in DESeqDataSet(se, design = design, ignoreRank) : some values in assay are not integers
#15 opened Apr 22, 2020 by whitneyt1
1
rawParse Error: Error in colnames<-(*tmp*, value = c("gene", "exprs", "cell_type")) : attempt to set 'colnames' on an object with less than two dimensions
#14 opened Apr 14, 2020 by oh111
2
Failed to install 'iTALK'...unable to access index for respo
#13 opened Mar 26, 2020 by whitneyt1
6
When used the FindLR, the result has InF in the logFC
#12 opened Mar 20, 2020 by zh-Bian
what information should be in the cell_type column?
#11 opened Feb 27, 2020 by kaizen89
2
Error in E<-(*tmp*, value = *vtmp*) : invalid indexing
#10 opened Feb 24, 2020 by PaulaVac
1
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