Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

initialize mcmc samples #5

Closed
shajoezhu opened this issue Feb 10, 2016 · 1 comment
Closed

initialize mcmc samples #5

shajoezhu opened this issue Feb 10, 2016 · 1 comment

Comments

@shajoezhu
Copy link
Member

No description provided.

@shajoezhu shajoezhu mentioned this issue Feb 12, 2016
Closed
@shajoezhu
Copy link
Member Author

also see #7, and commit mcveanlab/PfDeconv@2332530

shajoezhu pushed a commit that referenced this issue Mar 27, 2021
@bredelings @shajoezhu
# This is a combination of 12 commits.
303026d 
# This is the 1st commit message:

Use c++17.

# This is the commit message #2:

Add headers log-double.hpp and logsum.hpp

# This is the commit message #3:

Use log_double_t for titre prior.

# This is the commit message #4:

Rename deltaLLKs to calcLikelihoodRatio and return log_double_t

# This is the commit message #5:

Convert calcLLK to calcSiteLikelihood returning log_double_t

# This is the commit message #6:

Add a product( ) function.

# This is the commit message #7:

Add templatized version of max_value( ) and min_value( ).

# This is the commit message #8:

Add adding of multiplying a vector by a constant.

# This is the commit message #9:

Simplify code to add constant to vector in buildEmission.

# This is the commit message #10:

Remove some asserts that are false during unit tests.

# This is the commit message #11:

Change vector<double> llk{0,1}_ to vector<log_double_t> siteLikelihoods{0,1}_

# This is the commit message #12:

Convert McmcMachinery::currentLLks to vector<log_double_t>.

Also rename it to currentSiteLikelihoods_.
shajoezhu added a commit that referenced this issue Mar 27, 2021
@shajoezhu
# This is a combination of 15 commits.
0a92cd7 
# This is the 1st commit message:

Use c++17.

# This is the commit message #2:

Add headers log-double.hpp and logsum.hpp

# This is the commit message #3:

Use log_double_t for titre prior.

# This is the commit message #4:

Rename deltaLLKs to calcLikelihoodRatio and return log_double_t

# This is the commit message #5:

Convert calcLLK to calcSiteLikelihood returning log_double_t

# This is the commit message #6:

Add a product( ) function.

# This is the commit message #7:

Add templatized version of max_value( ) and min_value( ).

# This is the commit message #8:

Add adding of multiplying a vector by a constant.

# This is the commit message #9:

Simplify code to add constant to vector in buildEmission.

# This is the commit message #10:

Remove some asserts that are false during unit tests.

# This is the commit message #11:

Change vector<double> llk{0,1}_ to vector<log_double_t> siteLikelihoods{0,1}_

# This is the commit message #12:

Convert McmcMachinery::currentLLks to vector<log_double_t>.

Also rename it to currentSiteLikelihoods_.

# This is the commit message #13:

fixing code style check

# This is the commit message #14:

update, refixing the style

# This is the commit message #15:

Add headers log-double.hpp and logsum.hpp
shajoezhu added a commit that referenced this issue Mar 27, 2021
@shajoezhu
# This is a combination of 21 commits.
4376852 
# This is the 1st commit message:

Use c++17.

# This is the commit message #2:

Add headers log-double.hpp and logsum.hpp

# This is the commit message #3:

Use log_double_t for titre prior.

# This is the commit message #4:

Rename deltaLLKs to calcLikelihoodRatio and return log_double_t

# This is the commit message #5:

Convert calcLLK to calcSiteLikelihood returning log_double_t

# This is the commit message #6:

Add a product( ) function.

# This is the commit message #7:

Add templatized version of max_value( ) and min_value( ).

# This is the commit message #8:

Add adding of multiplying a vector by a constant.

# This is the commit message #9:

Simplify code to add constant to vector in buildEmission.

# This is the commit message #10:

Remove some asserts that are false during unit tests.

# This is the commit message #11:

Change vector<double> llk{0,1}_ to vector<log_double_t> siteLikelihoods{0,1}_

# This is the commit message #12:

Convert McmcMachinery::currentLLks to vector<log_double_t>.

Also rename it to currentSiteLikelihoods_.

# This is the commit message #13:

fixing code style check

# This is the commit message #14:

update, refixing the style

# This is the commit message #15:

Add headers log-double.hpp and logsum.hpp

# This is the commit message #16:

Use log_double_t for titre prior.

# This is the commit message #17:

Rename deltaLLKs to calcLikelihoodRatio and return log_double_t

# This is the commit message #18:

Convert calcLLK to calcSiteLikelihood returning log_double_t

# This is the commit message #19:

Add a product( ) function.

# This is the commit message #20:

Add templatized version of max_value( ) and min_value( ).

# This is the commit message #21:

Add adding of multiplying a vector by a constant.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@shajoezhu