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This PR replaces
mris_sample_parc
from FreeSurfer with our own python implementation for minor speed-up and fixing the memory leakage issues thatmris_sample_parc
shows in some cases ( see e.g. #397 which should be fixed now).This code also finds disconnected islands in cortex labels and fills them explicitly using a mode filter.
A final round of tests should be done before we merge this, but initial tests looked good.