SAM Annotation Tool (SAMAT)

SAMAT is a hackable PyQt5 based GUI labelling tool for semantic segmentation task enhanced by an assistance feature, reminiscent of the functionality offered by the Photoshop Magic Wand tool.

Note: Magic Wand is optional tool and uses SAM masks that can be generated by python script in scripts directory of this repo.

Showcase

Animation below shows annotation speed in real-time (SAM mask used).

Workflow

• (optional) Generate SAM masks from images via given script
• Organize yor data following this structure
• Specify path to your data in config.toml
• Run GUI via __main__.py (prerequisites should be satisfied)
• Annotate using brush (label is saved on sample switch)

Getting started

Prerequisites

Annotation tool itself requires only:

• Python 3.11
• PyQt5
• numpy

Example setup (Ubuntu):

git clone https://github.com/Divelix/samat.git
cd samat
sudo apt update
sudo apt install python3.11-venv
pip3 install virtualenv
virtualenv venv -p python3.11
source venv/bin/activate
python -m pip install -e .
python .

(optional) In order to generate SAM masks for Magic Wand, you will need to install:

• PyTorch to run SAM model inference
• segment-anything itself + related libs

Example setup (assuming Miniconda/Anaconda installed):

conda create -n samat python=3.11
conda activate samat
conda install pytorch torchvision torchaudio pytorch-cuda=11.8 -c pytorch -c nvidia
pip install git+https://github.com/facebookresearch/segment-anything.git
pip install opencv-python pycocotools matplotlib onnxruntime onnx

Dataset folder structure

Your data MUST follow this structure:

── my_dataset
   ├── images
   |   ├── 000001.png
   |   ├── 000002.png
   |   └── ...
   ├── labels (optional)
   |   ├── 000001.png
   |   ├── 000002.png
   |   └── ...
   ├── sam (optional)
   |   ├── 000001.png
   |   ├── 000002.png
   |   └── ...
   └── classes.json

• images contains .png files you want to label
• labels contains .png files with labels (will be automatically created if you have no labels yet)
• sam contains .png files with SAM annotations (8-bit grayscale product of SAM script from scripts/ folder)
• classes.json contains classes description that will be used for labeling

Example classes.json:

{
    "classes": [
        { "id": 1, "name": "human", "color": "#FF0000" },
        { "id": 2, "name": "car", "color": "#00FF00" },
    ]
}

where:

• id field must coinside with number keys on keyboard, so start with 1 (not 0). Any number of classes allowed, but only first 9 have their shortcuts.
• name field is arbitrary and used only for dispaly in GUI
• color field specifies the color this class would be displayed in GUI and encoded in output label .png

Note: specify path to your my_dataset (or any other name) inside config.toml.

Note: image files can have arbitrary names, but should resemble labels and sam names + only .png format is suppotred.

Shortcuts

Shortcut	Description
Left Mouse Button	Draw with brush + fill region (in SAM mode)
Right Mouse Button	Pan motion on zoomed-in image
Mouse Wheel	Zoom in/out
Ctrl + Mouse Wheel	Change brush size
1-9	Select class (color to draw on label layer)
E	Eraser tool (transparent brush)
Space	Reset zoom
C	Clear label
S	Switch SAM assistance mode on/off
,/.	Previous/Next sample