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Test run fails #51

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jwtobias opened this issue Nov 5, 2018 · 2 comments
Closed

Test run fails #51

jwtobias opened this issue Nov 5, 2018 · 2 comments

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@jwtobias
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jwtobias commented Nov 5, 2018 •
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In a local installation with conda the test run (as described in the tutorial) fails.

OS/Platform and dependencies
$ uname -a
Linux node061.hpc.local 2.6.32-504.el6.x86_64 #1 SMP Tue Sep 16 01:56:35 EDT 2014 x86_64 x86_64 x86_64 GNU/Linux

cromwell-34

$ conda -V
conda 4.5.11

ATACseq_pipeline_error_issueID_51.txt
debug_issueID_51.tar.gz
@leepc12
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leepc12 commented Nov 5, 2018

Please remove your locally installed cutadapt from your $PATH. You may need to edit your ~/.bashrc.

@jwtobias
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jwtobias commented Nov 5, 2018

This solves the error. I've removed my copy of cutadapt and the test run now proceeds beyond this point.

@jwtobias jwtobias closed this as completed Nov 5, 2018
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@leepc12 @jwtobias