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Fix read-only warning when creating GO data #625

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merged 2 commits into from
Aug 18, 2023
Merged

Fix read-only warning when creating GO data #625

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72323af
Fix read-only warning when writing GO data
nuno-agostinho Aug 17, 2023
b6e2cd2
Fix redundancy in GO data format
nuno-agostinho Aug 17, 2023
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3 changes: 2 additions & 1 deletion GO.pm
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Original file line number Diff line number Diff line change
Expand Up @@ -323,7 +323,8 @@ sub _write_GO_terms_to_file {
# when there is a new transcript, write $transcript_info to file and repeat
my $transcript_info;
my $previous_transcript = "";
while(my $row = $sth->fetchrow_arrayref()) {
while(my $line = $sth->fetchrow_arrayref()) {
my $row = [ @$line ];
my ($transcript_id, $go_term, $description) = splice(@$row, -3);

if ($transcript_id ne $previous_transcript) {
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