fix for state reached by HGVS test

Ensembl · Sep 4, 2017 · 1db0fc6 · 1db0fc6
1 parent ae8e33e
commit 1db0fc6
Showing 1 changed file with 2 additions and 2 deletions.
diff --git a/modules/Bio/EnsEMBL/Variation/Utils/VariationEffect.pm b/modules/Bio/EnsEMBL/Variation/Utils/VariationEffect.pm
@@ -816,7 +816,7 @@ sub _ins_del_start_altered {
     unless(exists($cache->{ins_del_start_altered})) {
         $cache->{ins_del_start_altered} = 0;
 
-        return 0 if $bvfo->isa('Bio::EnsEMBL::Variation::TranscriptStructuralVariation');
+        return 0 if $bvfoa->isa('Bio::EnsEMBL::Variation::TranscriptStructuralVariationAllele');
         return 0 unless $bvfoa->seq_is_unambiguous_dna();
         return 0 unless _overlaps_start_codon(@_);
 
@@ -1128,7 +1128,7 @@ sub _ins_del_stop_altered {
     unless(exists($cache->{ins_del_stop_altered})) {
         $cache->{ins_del_stop_altered} = 0;
 
-        return 0 if $bvfo->isa('Bio::EnsEMBL::Variation::TranscriptStructuralVariation');
+        return 0 if $bvfoa->isa('Bio::EnsEMBL::Variation::TranscriptStructuralVariationAllele');
         return 0 unless $bvfoa->seq_is_unambiguous_dna();
         return 0 unless _overlaps_stop_codon(@_);