-
Notifications
You must be signed in to change notification settings - Fork 53
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Request for new terms #1191
Comments
I think pathogen-suppressive is a better term that disease-suppressive (but include full synonyms). Do you have a ref for this concept? |
References for Disease/pathogen suppressive soils: |
You can see related stuff I'm working on here: https://github.com/turbomam/envo-robot-helpers |
Set sharing level for https://docs.google.com/spreadsheets/d/12GICSjx2s3Ey0Crv9uMdkW8unt3LxPcOS2_u7EMAr38/edit#gid=154764881 to public based on email from @jagadishcs |
@jagadishcs is the table below a good sample for motivating the "back yard" term request? Do you have any other examples from other sources? I got the example row from the I'm especially interested in whether "back yard" could be used in contexts besides US residences. Its meaning seems to have very strong geographical and cultural baggage. As in, a British person would be much more likely to call the same space a "garden" even if it didn't have formal plantings. And there are lots of examples for using "yard" in agricultural or industrial contexts. At a minimum, I propose labeling this 'residential back yard' and giving it a synonym 'back garden'. Maybe @cmungall @wdduncan @kaiiam or @pbuttigieg will have additional or different perspectives.
|
I'd also like to review the meaning of
Does at the back of imply further away from the house, relative to some road? Are houses the only structures that have back yards? How about a school or an apartment block? Your definition for 'yard' is
So could we use this definition for 'back yard'? A yard which is behind a building or group of buildings, relative to some entity like a road? |
I don't see why 'relative to some entity like a road' is necessary. backyard--an area of vegetated land adjacent to the back of a building and part of the property that includes the building. requires that the building have a defined front and back. Otherwise its just a yard. |
Thanks @smrgeoinfo . We're going to save this term for a future pull request. |
Still todo (mostly by me)
|
My understanding was that we were favoring the use of oboInOwl for ENVO, AFAIK this isn't standardized across OBO yet. What I put as the template strings in the ENVO-Robot-template-and-merge-workflow was my understanding the APs we agreed to be using if that's the the case please let me know and I can update that protocol. |
Hi, @kaiiam. On Thursday the 5th, @pbuttigieg suggested using DC predicates for the term creator and the term creation date. I agree that there is a strong precedent for using oboInOwl in EnvO. I don't have a strong preference, but @pbuttigieg , @wdduncan and I did talk some about recording term contributors in addition to term creators. |
The above protocol links to this example sheet with what I understood to be our standard APs in ENVO. Unfortunately we have used both DC and oboInOwl. I don't care either way I though @pbuttigieg had decided we should use oboInOwl but if we want to change that's fine we just just pick one and go with it.
|
uses the following citation to define Pathogen-Suppressive Soils
The 2014 paper describes the mechanism of pathogen suppression solely in terms of the presence of other (non-pathogenic?) microorganisms, not chemical additives. I haven't found a way to read the 1974 book onloine. @pbuttigieg I think you already anticipated this. Does this information have any effect on how you'd like to model 'pathogen-suppressive soil'? |
Thanks @kaiiam I was especially interested if you knew of any oboInOwl predicate for non-creator contributors, or if there is any EnvO precedent for making that distinction. |
please make a separate ticket for anything regarding the schema for annotation assertions. For now stick with what we do already in envo |
Not as far as I'm aware to either. My understanding is we just add oboInOwl#created_by APs linking to ORCIDs (as URLs) for anyone who contributed anything (and who wants attribution). |
NMDC-03_EnvO_template_robot_sheet |
* ignore pycharm .idea directory * NTRs from #1191 except for yard and back yard * Fix IRIs in created_by APs * normalising all ORCID links to HTTPS * content curation for #1192 * more content curation for #1192 * resolving open queries in #1191 Co-authored-by: pier.buttigieg <pier.buttigieg@gitlab.hzdr.de> Co-authored-by: kaiiam <kblumberg@email.arizona.edu> Co-authored-by: Pier Luigi Buttigieg <p.buttigieg@gmail.com>
@turbomam
@cmungall
@TBKReddy
Request for creation of new EnvO terms for the list provided here
The text was updated successfully, but these errors were encountered: