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There are indeed two java folders, one at the root of the package (containing the java source file .java) and another one located in inst containing the compiled files (.class and .jar) used to run the main TDLM's functions. The first one is not used while installing or running the package but it was a CRAN requirement.
There is this java folder in the main root folder of the package - https://github.com/EpiVec/TDLM/tree/master/java
And I saw it again in the isnt folder https://github.com/EpiVec/TDLM/tree/master/inst/java
Maybe I am missing something but could the author clarify what this folder is ? If not used , can it be deleted?
openjournals/joss-reviews#5434
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