Merge pull request #1764 from FCP-INDI/fix/pipeline-config-versions

🔖 Hotfix: Update version to 1.8.4

CPAC/pipeline/engine.py

@@ -1949,9 +1949,6 @@ def initiate_rpool(wf, cfg, data_paths=None, part_id=None):
                 ingress_raw_func_data(wf, rpool, cfg, data_paths, unique_id,
                                       part_id, ses_id)
 
-    # grab already-processed data from the output directory
-    rpool = ingress_output_dir(cfg, rpool, unique_id, creds_path)
-
     # grab any file paths from the pipeline config YAML
     rpool = ingress_pipeconfig_paths(cfg, rpool, unique_id, creds_path)
 

CPAC/resources/configs/data_config_S3-BIDS-ABIDE.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/data_config_S3-BIDS-ADHD200.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/data_config_S3-BIDS-ADHD200_only2.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/data_config_S3-BIDS-NKI-RocklandSample.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/data_config_cpac_benchmark.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/data_settings_template.yml

@@ -1,5 +1,5 @@
 # CPAC Data Settings File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/group_config_template.yml

@@ -1,5 +1,5 @@
 # CPAC Group-Level Analysis Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_abcd-options.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_anat-only.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_benchmark-ANTS.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_benchmark-FNIRT.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_blank.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_ccs-options.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_fmriprep-options.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_fx-options.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_monkey-ABCD.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_monkey.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_ndmg.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_nhp-macaque.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_preproc.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_rbc-options.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file for RBC options
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_regtest-1.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_regtest-2.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_regtest-3.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_regtest-4.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/pipeline_config_rodent.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/system_config.yml

@@ -1,5 +1,5 @@
 # C-PAC System Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/data-test_S3-ADHD200_1.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/data-test_S3-ADHD200_no-params.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/data-test_S3-NKI-RS_fmap.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/data_config_S3_CoRR_5only_mult-scan.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/data_config_S3_CoRR_5only_mult-sess.yml

@@ -1,5 +1,5 @@
 # CPAC Data Configuration File
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_ABCD.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_ANTs-3dSk-AllNuis.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_ANTs-3dSk-DistCorr3dSk.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_ANTs-3dSk-DistCorrBET.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_ANTs-BET-AllNuis.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_FNIRT-3dSk-AllNuis.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_FNIRT-BET-AllNuis-BASC.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_FNIRT-BET-AllNuis-ISC-voxel.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_FNIRT-BET-AllNuis-ISC.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_FNIRT-BET-AllNuis-MDMR.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_FNIRT-BET-AllNuis.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

CPAC/resources/configs/test_configs/pipe-test_all.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #

README.md

@@ -40,7 +40,7 @@ Documentation pertaining to this latest release can be found here: https://fcp-i
 Discussion Forum
 ---------------
 
-If you are stuck and need help or have any other questions or comments about C-PAC, there is a C-PAC discussion forum here: ttps://neurostars.org/tag/cpac
+If you are stuck and need help or have any other questions or comments about C-PAC, there is a C-PAC discussion forum here: https://neurostars.org/tag/cpac
 
 Issue Tracker and Bugs
 ----------------------

dev/docker_data/default_pipeline.yml

@@ -1,7 +1,7 @@
 %YAML 1.1
 ---
 # CPAC Pipeline Configuration YAML file
-# Version 1.8.4.dev
+# Version 1.8.4
 #
 # http://fcp-indi.github.io for more info.
 #