Pipeline running but barely any output

[Yvain-Desplat]

running into similar issues where many folder coming out of the pipeline are completely empty (see screenshot below)

as well, it keep throwing me a bunch of errors towards the end (see second screenshot) and I wouldn't be surprised if there was some other issues earlier, but my tmux doesn't let me go up any further for some reasons.
Is there any log file created by the code that could help me track where these issues originate and help me understand what's going on here ?

[FEI38750]

The error should happen in an earlier stage of running because the DEG step of the microbiome hasn't finished. Could you list the files in the temp folder? My email address is fwu2@tulane.edu
Could you also try the command "conda activate py2" to see if your py2 environment works?
Some HPC systems record the messages generated from the job into a log file for the user to check later. If not, the users need to save the terminal output during running to a file by themself. For example: add "> log.txt" following the command. Such as: bash ~/MTD/MTD.sh -i ~/raw_data/samplesheet.csv -o ~/MTD_output -h 9544 -t 20 > log.txt

[FEI38750]

Please try a test run to check if the pipeline has been installed successfully. For example: bash [path/to/MTD]/MTD.sh -i [path/to/MTD]/test/test1/samplesheet.csv -o [path/to/MTD]/test/test1/output -h 9606 -t [threads]