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Multi-Core support #39

Merged
merged 14 commits into from
Feb 28, 2019
Merged

Multi-Core support #39

merged 14 commits into from
Feb 28, 2019

Commits on Oct 31, 2018

  1. Added -j or --cores options for cutadapt (default is 1)

    @fjames003
    fjames003 committed Oct 31, 2018
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  2. Converted to all spaces to avoid problems

    @fjames003
    fjames003 committed Oct 31, 2018
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  3. Indented things to make easier to read

    @fjames003
    fjames003 committed Oct 31, 2018
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  4. Fixed multiline strings that broke during autoindent

    @fjames003
    fjames003 committed Oct 31, 2018
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Commits on Feb 27, 2019

  1. Changed gzip commands to pigz

    @fjames003
    fjames003 committed Feb 27, 2019
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  2. Merged changes from FelixKrueger

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    fjames003 committed Feb 27, 2019
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  3. Updated to reflect Felix's changes while still maintaining multicore … 

    …cutadapt as well as as pigz for multicore (de)compression.
    @fjames003
    fjames003 committed Feb 27, 2019
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  4. Added check for python version as well as pigz installation and adjus… 

    …ting multicore support accordingly. If python 2 detected, use cutadapt with one core.
    @fjames003
    fjames003 committed Feb 27, 2019
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  5. Changed the way of getting python version, since Anaconda appends its… 

    … name after version, breaking the previous way
    @fjames003
    fjames003 committed Feb 27, 2019
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  6. Fixed some syntax errors

    @fjames003
    fjames003 committed Feb 27, 2019
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  7. Need to do sanity check after assigning compression path. Also dont o… 

    …utput pigz version to screen, just chekc return code
    @fjames003
    fjames003 committed Feb 27, 2019
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  8. Moved python and pigz check to where the other checks are

    @fjames003
    fjames003 committed Feb 27, 2019
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  9. removed -f from cutadapt, not compatible with -j

    @fjames003
    fjames003 committed Feb 27, 2019
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Commits on Feb 28, 2019

  1. Merge branch 'master' into master

    FelixKrueger committed Feb 28, 2019
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